miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24646 3' -57.9 NC_005264.1 + 23089 0.66 0.850463
Target:  5'- --cGCGUuacGCGauacaaguauuUGCCGCcgGAGGcCCCg -3'
miRNA:   3'- cacCGCA---CGU-----------ACGGCGuaCUCCuGGG- -5'
24646 3' -57.9 NC_005264.1 + 100083 0.66 0.850463
Target:  5'- -gGGCGUaGCAUggcgGCCGC---GGGGCUCa -3'
miRNA:   3'- caCCGCA-CGUA----CGGCGuacUCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 98082 0.66 0.850463
Target:  5'- aUGGUGUGCcccgGCCGCcccGGGGuuaCCg -3'
miRNA:   3'- cACCGCACGua--CGGCGua-CUCCug-GG- -5'
24646 3' -57.9 NC_005264.1 + 16879 0.66 0.84968
Target:  5'- -cGGCGgcgGCAaacgauaUGUCGCcgucgucgGUGAGG-CCCa -3'
miRNA:   3'- caCCGCa--CGU-------ACGGCG--------UACUCCuGGG- -5'
24646 3' -57.9 NC_005264.1 + 118569 0.66 0.84968
Target:  5'- uUGGCGUGCAaacgcacUGgCGCGuUGAucaaggcaGGGCCUu -3'
miRNA:   3'- cACCGCACGU-------ACgGCGU-ACU--------CCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 111984 0.66 0.842551
Target:  5'- -cGGCGUuaA-GCCGCAguuUGuGGGCCg -3'
miRNA:   3'- caCCGCAcgUaCGGCGU---ACuCCUGGg -5'
24646 3' -57.9 NC_005264.1 + 107880 0.66 0.842551
Target:  5'- -aGGuCGUGCAuUGCCauuaGCGUGuucAGGAgCCa -3'
miRNA:   3'- caCC-GCACGU-ACGG----CGUAC---UCCUgGG- -5'
24646 3' -57.9 NC_005264.1 + 26359 0.66 0.842551
Target:  5'- uUGGCGUuCcgGCCGUAUgacgaGAGGAgUCg -3'
miRNA:   3'- cACCGCAcGuaCGGCGUA-----CUCCUgGG- -5'
24646 3' -57.9 NC_005264.1 + 119610 0.66 0.834453
Target:  5'- -aGGCG-GCAcgUGCCGCcUGcauucacugguAGGGCUCa -3'
miRNA:   3'- caCCGCaCGU--ACGGCGuAC-----------UCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 56525 0.66 0.834453
Target:  5'- -cGGCGcGCcgGCgGCAcaggUGAuGGugCCg -3'
miRNA:   3'- caCCGCaCGuaCGgCGU----ACU-CCugGG- -5'
24646 3' -57.9 NC_005264.1 + 154357 0.66 0.834453
Target:  5'- -cGGCc--CAcucUGCUGCuUGGGGACCCa -3'
miRNA:   3'- caCCGcacGU---ACGGCGuACUCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 50157 0.66 0.825337
Target:  5'- aUGGCGcacgaggGCGUGCCGCAauacuccgUGgccgucaucuacgGGGACaCCg -3'
miRNA:   3'- cACCGCa------CGUACGGCGU--------AC-------------UCCUG-GG- -5'
24646 3' -57.9 NC_005264.1 + 67482 0.67 0.809109
Target:  5'- uUGGCG-GCAcgcGCCGCccGucGGCCCc -3'
miRNA:   3'- cACCGCaCGUa--CGGCGuaCucCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 79405 0.67 0.800337
Target:  5'- -gGGCGUgGCGagGCCGCGgc-GGaACCCa -3'
miRNA:   3'- caCCGCA-CGUa-CGGCGUacuCC-UGGG- -5'
24646 3' -57.9 NC_005264.1 + 126248 0.67 0.791416
Target:  5'- -cGGCGaucGCcuucuuucucAUGCCGCGcGAGGACUUg -3'
miRNA:   3'- caCCGCa--CG----------UACGGCGUaCUCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 7221 0.67 0.791416
Target:  5'- -cGGCGaucGCcuucuuucucAUGCCGCGcGAGGACUUg -3'
miRNA:   3'- caCCGCa--CG----------UACGGCGUaCUCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 95364 0.67 0.790516
Target:  5'- -gGGCGgcGCGUGCCGCcaaacugccaggcGUG-GGACUUg -3'
miRNA:   3'- caCCGCa-CGUACGGCG-------------UACuCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 79090 0.67 0.782354
Target:  5'- -cGGCGaggGCugucUGCCGCA-GAGGGCa- -3'
miRNA:   3'- caCCGCa--CGu---ACGGCGUaCUCCUGgg -5'
24646 3' -57.9 NC_005264.1 + 150125 0.67 0.763845
Target:  5'- -gGGCGgaGCAUGUCa---GAGGGCCCg -3'
miRNA:   3'- caCCGCa-CGUACGGcguaCUCCUGGG- -5'
24646 3' -57.9 NC_005264.1 + 105353 0.67 0.763845
Target:  5'- -gGGCG-GC-UGCUGCAcGAGGugCg -3'
miRNA:   3'- caCCGCaCGuACGGCGUaCUCCugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.