miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 61432 0.66 0.990432
Target:  5'- cGCGCUGGUGGUAuucauagugcuGGGCC----UCGUGu -3'
miRNA:   3'- -CGCGGUCGCUAU-----------UCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 54462 0.66 0.990432
Target:  5'- cCGCCgAGCuGGUAAGGgCCgUcgUCGCc -3'
miRNA:   3'- cGCGG-UCG-CUAUUCC-GGaAuaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 6848 0.66 0.990304
Target:  5'- gGCGCCAGCGcgcaaccucugucGUGcGGgCUUGUUucucggCGCGu -3'
miRNA:   3'- -CGCGGUCGC-------------UAUuCCgGAAUAA------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 125874 0.66 0.990304
Target:  5'- gGCGCCAGCGcgcaaccucugucGUGcGGgCUUGUUucucggCGCGu -3'
miRNA:   3'- -CGCGGUCGC-------------UAUuCCgGAAUAA------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 25529 0.66 0.989096
Target:  5'- aGCGCCcauaaGGCGGcgcggacAAGGCgCUUG-UCGCGc -3'
miRNA:   3'- -CGCGG-----UCGCUa------UUCCG-GAAUaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 123494 0.66 0.989096
Target:  5'- -gGCCGcGCGGUugcuGGGCgaUGUgcUCGCGg -3'
miRNA:   3'- cgCGGU-CGCUAu---UCCGgaAUA--AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 28068 0.66 0.988227
Target:  5'- uGCGCCAuGCGAccgucuucgucaaagUcAGGCgUUAUUgCGCa -3'
miRNA:   3'- -CGCGGU-CGCU---------------AuUCCGgAAUAA-GCGc -5'
24647 3' -51.9 NC_005264.1 + 54339 0.66 0.987619
Target:  5'- aGCGCgCGGCGuuuAUGGcGaGCCUUAgaagcgUCGCGc -3'
miRNA:   3'- -CGCG-GUCGC---UAUU-C-CGGAAUa-----AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 79887 0.66 0.987619
Target:  5'- uCGCCGGCuc--AGGCCUggucUUUGCGu -3'
miRNA:   3'- cGCGGUCGcuauUCCGGAau--AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 131701 0.66 0.987619
Target:  5'- aGCG-UAGCGu--GGGCCUg---CGCGg -3'
miRNA:   3'- -CGCgGUCGCuauUCCGGAauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 91902 0.66 0.985993
Target:  5'- cGCGgCAGCGAU-GGGCggg---CGCGg -3'
miRNA:   3'- -CGCgGUCGCUAuUCCGgaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 23427 0.66 0.985993
Target:  5'- aCGCCAGCGGUgcccgucucGAGuGCCc-GUUCGUu -3'
miRNA:   3'- cGCGGUCGCUA---------UUC-CGGaaUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 146344 0.66 0.985993
Target:  5'- uGCGCCGGCG-UGccucgaccccgcAGGCCac---CGCGg -3'
miRNA:   3'- -CGCGGUCGCuAU------------UCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 121855 0.66 0.985993
Target:  5'- cGgGUUGGCGG-AGGGCCgg--UCGCGc -3'
miRNA:   3'- -CgCGGUCGCUaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 44589 0.66 0.985993
Target:  5'- aCGCCAGCucugcgcUAGGGuCCUUGUUCcuggugGCGg -3'
miRNA:   3'- cGCGGUCGcu-----AUUCC-GGAAUAAG------CGC- -5'
24647 3' -51.9 NC_005264.1 + 70097 0.66 0.985993
Target:  5'- aGCuGUCGGCGcgGAGGaCCUUAUcgagcugcCGCGu -3'
miRNA:   3'- -CG-CGGUCGCuaUUCC-GGAAUAa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 2829 0.66 0.985993
Target:  5'- cGgGUUGGCGG-AGGGCCgg--UCGCGc -3'
miRNA:   3'- -CgCGGUCGCUaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 33949 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 152976 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 36551 0.66 0.984207
Target:  5'- cGCGCCcgaaAGCGGcauGGCCgccucCGCGg -3'
miRNA:   3'- -CGCGG----UCGCUauuCCGGaauaaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.