miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 89088 1.11 0.005708
Target:  5'- uGCGCCAGCGAUAAGGCCUUAUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCUAUUCCGGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 80117 0.78 0.547895
Target:  5'- gGCGCUAGCGGUccgcaaGGGGCCgcugUCGUGg -3'
miRNA:   3'- -CGCGGUCGCUA------UUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 73050 0.76 0.610129
Target:  5'- aGCGCCGGCGGUAugcGGCCagAgaCGUGg -3'
miRNA:   3'- -CGCGGUCGCUAUu--CCGGaaUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 78497 0.75 0.672957
Target:  5'- cGCGCCGgugcacGCGGUGAGGCCagUAaccaUCGCGc -3'
miRNA:   3'- -CGCGGU------CGCUAUUCCGGa-AUa---AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 122179 0.75 0.672957
Target:  5'- gGCGCCAGCGuaGUAAGGCUcg---CGCa -3'
miRNA:   3'- -CGCGGUCGC--UAUUCCGGaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 145544 0.75 0.693717
Target:  5'- cGCGCUAGCGGUAAccguGGCCaccaUGUUUGCc -3'
miRNA:   3'- -CGCGGUCGCUAUU----CCGGa---AUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 72317 0.74 0.734509
Target:  5'- gGCGUUGGCGGUuuGGCCUUcgUCGaUGg -3'
miRNA:   3'- -CGCGGUCGCUAuuCCGGAAuaAGC-GC- -5'
24647 3' -51.9 NC_005264.1 + 25423 0.73 0.773808
Target:  5'- uGCGCCAgGCGAUAcgauuGGCCU---UCGUGc -3'
miRNA:   3'- -CGCGGU-CGCUAUu----CCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 60895 0.73 0.777631
Target:  5'- aCGCC-GCGGUGGGGCCgacgccgccaguUUCGCGc -3'
miRNA:   3'- cGCGGuCGCUAUUCCGGaau---------AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 158252 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 39225 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 135154 0.73 0.801921
Target:  5'- aGCGUCGGCGAggcaGAGGCCagc--CGCGu -3'
miRNA:   3'- -CGCGGUCGCUa---UUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 94949 0.73 0.801921
Target:  5'- cGCGUCGGUGGU-GGGCC----UCGCGg -3'
miRNA:   3'- -CGCGGUCGCUAuUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 138540 0.73 0.801921
Target:  5'- uGCGCgUAGCcacaGAGGCCgccgUGUUCGCGa -3'
miRNA:   3'- -CGCG-GUCGcua-UUCCGGa---AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 64686 0.73 0.810982
Target:  5'- cUGCCGGCGGgcAGGCCgUGcUCGCc -3'
miRNA:   3'- cGCGGUCGCUauUCCGGaAUaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 25628 0.72 0.819873
Target:  5'- aCGgCGGCGGUGGGGCCgcgcucCGCGu -3'
miRNA:   3'- cGCgGUCGCUAUUCCGGaauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 149225 0.72 0.837108
Target:  5'- uGCGCCAGCGGUcacugucgcuGGCCggUGUggCGCu -3'
miRNA:   3'- -CGCGGUCGCUAuu--------CCGGa-AUAa-GCGc -5'
24647 3' -51.9 NC_005264.1 + 118873 0.72 0.842959
Target:  5'- uGCGUCcucaucaccguucgGGCGGUAGGGCCUgaccacCGCGu -3'
miRNA:   3'- -CGCGG--------------UCGCUAUUCCGGAauaa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 393 0.72 0.853561
Target:  5'- aGCGCCGGCGc---GGUCguguaccUGUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCuauuCCGGa------AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 153303 0.7 0.903557
Target:  5'- gGCuGCgAGCGAcaaaggcaacgagUGAGGCCagUGUUCGUGu -3'
miRNA:   3'- -CG-CGgUCGCU-------------AUUCCGGa-AUAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.