miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 135770 0.7 0.904198
Target:  5'- uGCGCacgCGGCGAUcagaGAGGCCUgggUgGCGc -3'
miRNA:   3'- -CGCG---GUCGCUA----UUCCGGAauaAgCGC- -5'
24647 3' -51.9 NC_005264.1 + 54188 0.7 0.910481
Target:  5'- uCGCCucGGCGGUAAGGUacgAUUgCGCGg -3'
miRNA:   3'- cGCGG--UCGCUAUUCCGgaaUAA-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 63079 0.7 0.916516
Target:  5'- -aGCuCGGCGA--GGGCCg---UCGCGg -3'
miRNA:   3'- cgCG-GUCGCUauUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 132310 0.7 0.922301
Target:  5'- cGCGCCAGCGAggcGGGUCgugga-GCu -3'
miRNA:   3'- -CGCGGUCGCUau-UCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 13283 0.7 0.922301
Target:  5'- cGCGCCAGCGAggcGGGUCgugga-GCu -3'
miRNA:   3'- -CGCGGUCGCUau-UCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 73711 0.69 0.927835
Target:  5'- gGCGCCAGUaccgacGGCCUUG--CGCGg -3'
miRNA:   3'- -CGCGGUCGcuauu-CCGGAAUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 95570 0.69 0.932601
Target:  5'- cGCGCUAGCGcgacucaAUAAGGCUcuc-UCGUGg -3'
miRNA:   3'- -CGCGGUCGC-------UAUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 64151 0.69 0.933118
Target:  5'- gGCGCC-GCGAUccGGCCggUGUgcaagCGCc -3'
miRNA:   3'- -CGCGGuCGCUAuuCCGGa-AUAa----GCGc -5'
24647 3' -51.9 NC_005264.1 + 120786 0.69 0.933118
Target:  5'- cGCGCCGcgggcaacGCGAUuggauAGGCCgcgugCGCGu -3'
miRNA:   3'- -CGCGGU--------CGCUAu----UCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 69936 0.69 0.93815
Target:  5'- -aGCCGGaCGuagAGGGCCcugGUUCGCu -3'
miRNA:   3'- cgCGGUC-GCua-UUCCGGaa-UAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 3860 0.69 0.940093
Target:  5'- uGCGCCGGgGAUuGGGCUgccccacgucuccgUcUUCGCGu -3'
miRNA:   3'- -CGCGGUCgCUAuUCCGGa-------------AuAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 42149 0.69 0.942933
Target:  5'- uUGUCGGCGc-GAGGCCUUGUUUGg- -3'
miRNA:   3'- cGCGGUCGCuaUUCCGGAAUAAGCgc -5'
24647 3' -51.9 NC_005264.1 + 17036 0.69 0.942933
Target:  5'- aGUGCCAGa-GUGAguacucugcGGuCCUUAUUCGCGc -3'
miRNA:   3'- -CGCGGUCgcUAUU---------CC-GGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 132448 0.69 0.942933
Target:  5'- uCGCCGGCGucAAGGCCUUucuggaagUGCa -3'
miRNA:   3'- cGCGGUCGCuaUUCCGGAAuaa-----GCGc -5'
24647 3' -51.9 NC_005264.1 + 16173 0.69 0.947468
Target:  5'- cCGCCcuGCGcgGAGGUCgg--UCGCGg -3'
miRNA:   3'- cGCGGu-CGCuaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 81647 0.69 0.947468
Target:  5'- cGCGgUGGUGAUGGGGCU--GUUCGUc -3'
miRNA:   3'- -CGCgGUCGCUAUUCCGGaaUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 43676 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 162702 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 9815 0.68 0.951759
Target:  5'- cGCgGCCGGCuacauGGGCCgccgcacGUUCGCGa -3'
miRNA:   3'- -CG-CGGUCGcuau-UCCGGaa-----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 128841 0.68 0.951759
Target:  5'- cGCgGCCGGCuacauGGGCCgccgcacGUUCGCGa -3'
miRNA:   3'- -CG-CGGUCGcuau-UCCGGaa-----UAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.