miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 36003 0.66 0.984207
Target:  5'- aCGCgCAGCGAcGAGGCgUUGccCGCc -3'
miRNA:   3'- cGCG-GUCGCUaUUCCGgAAUaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 160097 0.66 0.984207
Target:  5'- cGCGCUAGUuc-AAGGCCUaGUgaCGCGc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGAaUAa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 36551 0.66 0.984207
Target:  5'- cGCGCCcgaaAGCGGcauGGCCgccucCGCGg -3'
miRNA:   3'- -CGCGG----UCGCUauuCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 11295 0.67 0.982255
Target:  5'- cGCGCCAG-GGUAGGGCgUcca-CGCc -3'
miRNA:   3'- -CGCGGUCgCUAUUCCGgAauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 59993 0.67 0.982255
Target:  5'- cCGCgAGCGAgacGGCCgcgUGgcCGCGg -3'
miRNA:   3'- cGCGgUCGCUauuCCGGa--AUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 55157 0.67 0.980125
Target:  5'- gGCG-CAGCGuAUGcGGCCUcUGggCGCGg -3'
miRNA:   3'- -CGCgGUCGC-UAUuCCGGA-AUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 135194 0.67 0.980125
Target:  5'- aGCGCC-GCGu---GGCCaaacgaGUUCGCGc -3'
miRNA:   3'- -CGCGGuCGCuauuCCGGaa----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 47859 0.67 0.980125
Target:  5'- aGCGCCGGCacgc--GCCUcaaGUUCGCGc -3'
miRNA:   3'- -CGCGGUCGcuauucCGGAa--UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 52882 0.67 0.980125
Target:  5'- cGCGCgAGCGA-GGGGCUg----CGUGg -3'
miRNA:   3'- -CGCGgUCGCUaUUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 21347 0.67 0.980125
Target:  5'- uGCGCCGGggccgGAUGAGGCUgUAgcCGUGu -3'
miRNA:   3'- -CGCGGUCg----CUAUUCCGGaAUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 127341 0.67 0.980125
Target:  5'- aCGuCCAGCGAUAccaaGCCg---UCGCGa -3'
miRNA:   3'- cGC-GGUCGCUAUuc--CGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 50306 0.67 0.980125
Target:  5'- -gGUCGGCGGUuacGGCCUggagcCGCGa -3'
miRNA:   3'- cgCGGUCGCUAuu-CCGGAauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 72730 0.67 0.977811
Target:  5'- aCGCCAcGCGGUAcacuucggcGGGCCUguc-CGCu -3'
miRNA:   3'- cGCGGU-CGCUAU---------UCCGGAauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 84846 0.67 0.977811
Target:  5'- uCGCCcGCGAUcgcGGCCUucgUAUcUCGCGc -3'
miRNA:   3'- cGCGGuCGCUAuu-CCGGA---AUA-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 121455 0.67 0.97708
Target:  5'- aGCGCgCGGCcuacgcguacauuaGA-GAGGCCguuUUCGCGg -3'
miRNA:   3'- -CGCG-GUCG--------------CUaUUCCGGaauAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 53113 0.67 0.975564
Target:  5'- gGCGCuCGGCGAgggggccgagGAGGCCgggcaaucugcCGCGg -3'
miRNA:   3'- -CGCG-GUCGCUa---------UUCCGGaauaa------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 16319 0.67 0.975305
Target:  5'- ----gAGUGAaagAAGGCCUUGUUUGCGc -3'
miRNA:   3'- cgcggUCGCUa--UUCCGGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 91561 0.67 0.975305
Target:  5'- cGCGgCGGgGGgcacGAGGCUUg--UCGCGg -3'
miRNA:   3'- -CGCgGUCgCUa---UUCCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 69671 0.67 0.975305
Target:  5'- aCG-CGGCGcUGGGGCCUUGguucucCGCGg -3'
miRNA:   3'- cGCgGUCGCuAUUCCGGAAUaa----GCGC- -5'
24647 3' -51.9 NC_005264.1 + 88225 0.67 0.975305
Target:  5'- aGCGCCAGgGGgaacgUGGGGUCagg--CGCGg -3'
miRNA:   3'- -CGCGGUCgCU-----AUUCCGGaauaaGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.