miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 88225 0.67 0.975305
Target:  5'- aGCGCCAGgGGgaacgUGGGGUCagg--CGCGg -3'
miRNA:   3'- -CGCGGUCgCU-----AUUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 125705 0.67 0.974779
Target:  5'- gGCGCCAGCagcGAGGCCgagacggcCGCc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGaauaa---GCGc -5'
24647 3' -51.9 NC_005264.1 + 6678 0.67 0.974779
Target:  5'- gGCGCCAGCagcGAGGCCgagacggcCGCc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGaauaa---GCGc -5'
24647 3' -51.9 NC_005264.1 + 146882 0.67 0.972597
Target:  5'- aGCGCCAGUGGUugcguGGCUcg---CGCa -3'
miRNA:   3'- -CGCGGUCGCUAuu---CCGGaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 144417 0.67 0.972597
Target:  5'- cGCGCCgAGCGAgAGGGCgCgccugCGCc -3'
miRNA:   3'- -CGCGG-UCGCUaUUCCG-GaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 37144 0.67 0.972597
Target:  5'- gGCGCCGGCGGUcucuCCaUGUUCGgGa -3'
miRNA:   3'- -CGCGGUCGCUAuuccGGaAUAAGCgC- -5'
24647 3' -51.9 NC_005264.1 + 43638 0.67 0.972597
Target:  5'- cGCGCCGGCGAggucguAGGUgUacgGUcggCGCGc -3'
miRNA:   3'- -CGCGGUCGCUau----UCCGgAa--UAa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 140962 0.67 0.972597
Target:  5'- cGCGCCAGCuc---GGCCUUuuccUCGgGg -3'
miRNA:   3'- -CGCGGUCGcuauuCCGGAAua--AGCgC- -5'
24647 3' -51.9 NC_005264.1 + 161387 0.67 0.971745
Target:  5'- cCGCCGGCGAU--GGCCggugcuggcuccCGCGg -3'
miRNA:   3'- cGCGGUCGCUAuuCCGGaauaa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 42360 0.67 0.971745
Target:  5'- cCGCCGGCGAU--GGCCggugcuggcuccCGCGg -3'
miRNA:   3'- cGCGGUCGCUAuuCCGGaauaa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 30845 0.68 0.970873
Target:  5'- gGCGCCGGuCGGcccaccgccaccGGCCUgucgUCGCGa -3'
miRNA:   3'- -CGCGGUC-GCUauu---------CCGGAaua-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 130523 0.68 0.969682
Target:  5'- aCGCCGGCGAgauAGaCCUg---CGCGa -3'
miRNA:   3'- cGCGGUCGCUau-UCcGGAauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 87039 0.68 0.969682
Target:  5'- cUGCCGGgGGUcuGGCCUUcgucaacagcUUCGCGa -3'
miRNA:   3'- cGCGGUCgCUAuuCCGGAAu---------AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 76205 0.68 0.96783
Target:  5'- gGCGCCcaacgcagaagagguGGCGAagaAAGGCUg---UCGCGa -3'
miRNA:   3'- -CGCGG---------------UCGCUa--UUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 16880 0.68 0.966551
Target:  5'- cGCGCCGGCGA--AGGUCgca---GCa -3'
miRNA:   3'- -CGCGGUCGCUauUCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 43898 0.68 0.9632
Target:  5'- gGCGCCGGagaCGAUAGcgcGGCCg---UCGCc -3'
miRNA:   3'- -CGCGGUC---GCUAUU---CCGGaauaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 148315 0.68 0.9632
Target:  5'- cGCGCCGGUGuucGUAuGGUCUgaggUUGCGu -3'
miRNA:   3'- -CGCGGUCGC---UAUuCCGGAaua-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 76942 0.68 0.9632
Target:  5'- aGCGCCuGCGuuacGAGGCCU--UUCaCGg -3'
miRNA:   3'- -CGCGGuCGCua--UUCCGGAauAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 81799 0.68 0.96215
Target:  5'- cGCGCCAGUGAggguagacggcgggUAGGcGCCgcugGUUCGa- -3'
miRNA:   3'- -CGCGGUCGCU--------------AUUC-CGGaa--UAAGCgc -5'
24647 3' -51.9 NC_005264.1 + 1006 0.68 0.95962
Target:  5'- cGCGCCcguGUGGUGggggggcagGGGCCguucugUAUucUCGCGg -3'
miRNA:   3'- -CGCGGu--CGCUAU---------UCCGGa-----AUA--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.