miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 393 0.72 0.853561
Target:  5'- aGCGCCGGCGc---GGUCguguaccUGUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCuauuCCGGa------AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 1006 0.68 0.95962
Target:  5'- cGCGCCcguGUGGUGggggggcagGGGCCguucugUAUucUCGCGg -3'
miRNA:   3'- -CGCGGu--CGCUAU---------UCCGGa-----AUA--AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 2829 0.66 0.985993
Target:  5'- cGgGUUGGCGG-AGGGCCgg--UCGCGc -3'
miRNA:   3'- -CgCGGUCGCUaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 3860 0.69 0.940093
Target:  5'- uGCGCCGGgGAUuGGGCUgccccacgucuccgUcUUCGCGu -3'
miRNA:   3'- -CGCGGUCgCUAuUCCGGa-------------AuAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 6678 0.67 0.974779
Target:  5'- gGCGCCAGCagcGAGGCCgagacggcCGCc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGaauaa---GCGc -5'
24647 3' -51.9 NC_005264.1 + 6848 0.66 0.990304
Target:  5'- gGCGCCAGCGcgcaaccucugucGUGcGGgCUUGUUucucggCGCGu -3'
miRNA:   3'- -CGCGGUCGC-------------UAUuCCgGAAUAA------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 9815 0.68 0.951759
Target:  5'- cGCgGCCGGCuacauGGGCCgccgcacGUUCGCGa -3'
miRNA:   3'- -CG-CGGUCGcuau-UCCGGaa-----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 11295 0.67 0.982255
Target:  5'- cGCGCCAG-GGUAGGGCgUcca-CGCc -3'
miRNA:   3'- -CGCGGUCgCUAUUCCGgAauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 13283 0.7 0.922301
Target:  5'- cGCGCCAGCGAggcGGGUCgugga-GCu -3'
miRNA:   3'- -CGCGGUCGCUau-UCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 16173 0.69 0.947468
Target:  5'- cCGCCcuGCGcgGAGGUCgg--UCGCGg -3'
miRNA:   3'- cGCGGu-CGCuaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 16319 0.67 0.975305
Target:  5'- ----gAGUGAaagAAGGCCUUGUUUGCGc -3'
miRNA:   3'- cgcggUCGCUa--UUCCGGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 16880 0.68 0.966551
Target:  5'- cGCGCCGGCGA--AGGUCgca---GCa -3'
miRNA:   3'- -CGCGGUCGCUauUCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 17036 0.69 0.942933
Target:  5'- aGUGCCAGa-GUGAguacucugcGGuCCUUAUUCGCGc -3'
miRNA:   3'- -CGCGGUCgcUAUU---------CC-GGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 20236 0.68 0.955808
Target:  5'- aGC-CCGGCGu---GGCCaUcgUCGCGg -3'
miRNA:   3'- -CGcGGUCGCuauuCCGGaAuaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 21347 0.67 0.980125
Target:  5'- uGCGCCGGggccgGAUGAGGCUgUAgcCGUGu -3'
miRNA:   3'- -CGCGGUCg----CUAUUCCGGaAUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 23427 0.66 0.985993
Target:  5'- aCGCCAGCGGUgcccgucucGAGuGCCc-GUUCGUu -3'
miRNA:   3'- cGCGGUCGCUA---------UUC-CGGaaUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 25423 0.73 0.773808
Target:  5'- uGCGCCAgGCGAUAcgauuGGCCU---UCGUGc -3'
miRNA:   3'- -CGCGGU-CGCUAUu----CCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 25529 0.66 0.989096
Target:  5'- aGCGCCcauaaGGCGGcgcggacAAGGCgCUUG-UCGCGc -3'
miRNA:   3'- -CGCGG-----UCGCUa------UUCCG-GAAUaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 25628 0.72 0.819873
Target:  5'- aCGgCGGCGGUGGGGCCgcgcucCGCGu -3'
miRNA:   3'- cGCgGUCGCUAUUCCGGaauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 28068 0.66 0.988227
Target:  5'- uGCGCCAuGCGAccgucuucgucaaagUcAGGCgUUAUUgCGCa -3'
miRNA:   3'- -CGCGGU-CGCU---------------AuUCCGgAAUAA-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.