miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 30845 0.68 0.970873
Target:  5'- gGCGCCGGuCGGcccaccgccaccGGCCUgucgUCGCGa -3'
miRNA:   3'- -CGCGGUC-GCUauu---------CCGGAaua-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 33949 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 36003 0.66 0.984207
Target:  5'- aCGCgCAGCGAcGAGGCgUUGccCGCc -3'
miRNA:   3'- cGCG-GUCGCUaUUCCGgAAUaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 36551 0.66 0.984207
Target:  5'- cGCGCCcgaaAGCGGcauGGCCgccucCGCGg -3'
miRNA:   3'- -CGCGG----UCGCUauuCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 37144 0.67 0.972597
Target:  5'- gGCGCCGGCGGUcucuCCaUGUUCGgGa -3'
miRNA:   3'- -CGCGGUCGCUAuuccGGaAUAAGCgC- -5'
24647 3' -51.9 NC_005264.1 + 39225 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 42149 0.69 0.942933
Target:  5'- uUGUCGGCGc-GAGGCCUUGUUUGg- -3'
miRNA:   3'- cGCGGUCGCuaUUCCGGAAUAAGCgc -5'
24647 3' -51.9 NC_005264.1 + 42360 0.67 0.971745
Target:  5'- cCGCCGGCGAU--GGCCggugcuggcuccCGCGg -3'
miRNA:   3'- cGCGGUCGCUAuuCCGGaauaa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 43638 0.67 0.972597
Target:  5'- cGCGCCGGCGAggucguAGGUgUacgGUcggCGCGc -3'
miRNA:   3'- -CGCGGUCGCUau----UCCGgAa--UAa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 43676 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 43898 0.68 0.9632
Target:  5'- gGCGCCGGagaCGAUAGcgcGGCCg---UCGCc -3'
miRNA:   3'- -CGCGGUC---GCUAUU---CCGGaauaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 44589 0.66 0.985993
Target:  5'- aCGCCAGCucugcgcUAGGGuCCUUGUUCcuggugGCGg -3'
miRNA:   3'- cGCGGUCGcu-----AUUCC-GGAAUAAG------CGC- -5'
24647 3' -51.9 NC_005264.1 + 47859 0.67 0.980125
Target:  5'- aGCGCCGGCacgc--GCCUcaaGUUCGCGc -3'
miRNA:   3'- -CGCGGUCGcuauucCGGAa--UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 50306 0.67 0.980125
Target:  5'- -gGUCGGCGGUuacGGCCUggagcCGCGa -3'
miRNA:   3'- cgCGGUCGCUAuu-CCGGAauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 52882 0.67 0.980125
Target:  5'- cGCGCgAGCGA-GGGGCUg----CGUGg -3'
miRNA:   3'- -CGCGgUCGCUaUUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 53113 0.67 0.975564
Target:  5'- gGCGCuCGGCGAgggggccgagGAGGCCgggcaaucugcCGCGg -3'
miRNA:   3'- -CGCG-GUCGCUa---------UUCCGGaauaa------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 54188 0.7 0.910481
Target:  5'- uCGCCucGGCGGUAAGGUacgAUUgCGCGg -3'
miRNA:   3'- cGCGG--UCGCUAUUCCGgaaUAA-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 54339 0.66 0.987619
Target:  5'- aGCGCgCGGCGuuuAUGGcGaGCCUUAgaagcgUCGCGc -3'
miRNA:   3'- -CGCG-GUCGC---UAUU-C-CGGAAUa-----AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 54462 0.66 0.990432
Target:  5'- cCGCCgAGCuGGUAAGGgCCgUcgUCGCc -3'
miRNA:   3'- cGCGG-UCG-CUAUUCC-GGaAuaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 55157 0.67 0.980125
Target:  5'- gGCG-CAGCGuAUGcGGCCUcUGggCGCGg -3'
miRNA:   3'- -CGCgGUCGC-UAUuCCGGA-AUaaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.