miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 162702 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 162665 0.66 0.984207
Target:  5'- cGCGCCGGCGGgucguAGGUgUacgGUcggCGCGc -3'
miRNA:   3'- -CGCGGUCGCUau---UCCGgAa--UAa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 161387 0.67 0.971745
Target:  5'- cCGCCGGCGAU--GGCCggugcuggcuccCGCGg -3'
miRNA:   3'- cGCGGUCGCUAuuCCGGaauaa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 160097 0.66 0.984207
Target:  5'- cGCGCUAGUuc-AAGGCCUaGUgaCGCGc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGAaUAa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 158252 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 154541 0.68 0.952588
Target:  5'- cGUGCCGGCGAUGGcacgcggaucuccccGGCCUgcaacgagGCGg -3'
miRNA:   3'- -CGCGGUCGCUAUU---------------CCGGAauaag---CGC- -5'
24647 3' -51.9 NC_005264.1 + 153303 0.7 0.903557
Target:  5'- gGCuGCgAGCGAcaaaggcaacgagUGAGGCCagUGUUCGUGu -3'
miRNA:   3'- -CG-CGgUCGCU-------------AUUCCGGa-AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 152976 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 149225 0.72 0.837108
Target:  5'- uGCGCCAGCGGUcacugucgcuGGCCggUGUggCGCu -3'
miRNA:   3'- -CGCGGUCGCUAuu--------CCGGa-AUAa-GCGc -5'
24647 3' -51.9 NC_005264.1 + 148315 0.68 0.9632
Target:  5'- cGCGCCGGUGuucGUAuGGUCUgaggUUGCGu -3'
miRNA:   3'- -CGCGGUCGC---UAUuCCGGAaua-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 146882 0.67 0.972597
Target:  5'- aGCGCCAGUGGUugcguGGCUcg---CGCa -3'
miRNA:   3'- -CGCGGUCGCUAuu---CCGGaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 146344 0.66 0.985993
Target:  5'- uGCGCCGGCG-UGccucgaccccgcAGGCCac---CGCGg -3'
miRNA:   3'- -CGCGGUCGCuAU------------UCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 145544 0.75 0.693717
Target:  5'- cGCGCUAGCGGUAAccguGGCCaccaUGUUUGCc -3'
miRNA:   3'- -CGCGGUCGCUAUU----CCGGa---AUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 144417 0.67 0.972597
Target:  5'- cGCGCCgAGCGAgAGGGCgCgccugCGCc -3'
miRNA:   3'- -CGCGG-UCGCUaUUCCG-GaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 140962 0.67 0.972597
Target:  5'- cGCGCCAGCuc---GGCCUUuuccUCGgGg -3'
miRNA:   3'- -CGCGGUCGcuauuCCGGAAua--AGCgC- -5'
24647 3' -51.9 NC_005264.1 + 138540 0.73 0.801921
Target:  5'- uGCGCgUAGCcacaGAGGCCgccgUGUUCGCGa -3'
miRNA:   3'- -CGCG-GUCGcua-UUCCGGa---AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 135770 0.7 0.904198
Target:  5'- uGCGCacgCGGCGAUcagaGAGGCCUgggUgGCGc -3'
miRNA:   3'- -CGCG---GUCGCUA----UUCCGGAauaAgCGC- -5'
24647 3' -51.9 NC_005264.1 + 135194 0.67 0.980125
Target:  5'- aGCGCC-GCGu---GGCCaaacgaGUUCGCGc -3'
miRNA:   3'- -CGCGGuCGCuauuCCGGaa----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 135154 0.73 0.801921
Target:  5'- aGCGUCGGCGAggcaGAGGCCagc--CGCGu -3'
miRNA:   3'- -CGCGGUCGCUa---UUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 132448 0.69 0.942933
Target:  5'- uCGCCGGCGucAAGGCCUUucuggaagUGCa -3'
miRNA:   3'- cGCGGUCGCuaUUCCGGAAuaa-----GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.