miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 89088 1.11 0.005708
Target:  5'- uGCGCCAGCGAUAAGGCCUUAUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCUAUUCCGGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 162702 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 1006 0.68 0.95962
Target:  5'- cGCGCCcguGUGGUGggggggcagGGGCCguucugUAUucUCGCGg -3'
miRNA:   3'- -CGCGGu--CGCUAU---------UCCGGa-----AUA--AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 125874 0.66 0.990304
Target:  5'- gGCGCCAGCGcgcaaccucugucGUGcGGgCUUGUUucucggCGCGu -3'
miRNA:   3'- -CGCGGUCGC-------------UAUuCCgGAAUAA------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 158252 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 135154 0.73 0.801921
Target:  5'- aGCGUCGGCGAggcaGAGGCCagc--CGCGu -3'
miRNA:   3'- -CGCGGUCGCUa---UUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 118873 0.72 0.842959
Target:  5'- uGCGUCcucaucaccguucgGGCGGUAGGGCCUgaccacCGCGu -3'
miRNA:   3'- -CGCGG--------------UCGCUAUUCCGGAauaa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 393 0.72 0.853561
Target:  5'- aGCGCCGGCGc---GGUCguguaccUGUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCuauuCCGGa------AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 132310 0.7 0.922301
Target:  5'- cGCGCCAGCGAggcGGGUCgugga-GCu -3'
miRNA:   3'- -CGCGGUCGCUau-UCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 81647 0.69 0.947468
Target:  5'- cGCGgUGGUGAUGGGGCU--GUUCGUc -3'
miRNA:   3'- -CGCgGUCGCUAUUCCGGaaUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 69936 0.69 0.93815
Target:  5'- -aGCCGGaCGuagAGGGCCcugGUUCGCu -3'
miRNA:   3'- cgCGGUC-GCua-UUCCGGaa-UAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 63079 0.7 0.916516
Target:  5'- -aGCuCGGCGA--GGGCCg---UCGCGg -3'
miRNA:   3'- cgCG-GUCGCUauUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 145544 0.75 0.693717
Target:  5'- cGCGCUAGCGGUAAccguGGCCaccaUGUUUGCc -3'
miRNA:   3'- -CGCGGUCGCUAUU----CCGGa---AUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 3860 0.69 0.940093
Target:  5'- uGCGCCGGgGAUuGGGCUgccccacgucuccgUcUUCGCGu -3'
miRNA:   3'- -CGCGGUCgCUAuUCCGGa-------------AuAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 25423 0.73 0.773808
Target:  5'- uGCGCCAgGCGAUAcgauuGGCCU---UCGUGc -3'
miRNA:   3'- -CGCGGU-CGCUAUu----CCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 54188 0.7 0.910481
Target:  5'- uCGCCucGGCGGUAAGGUacgAUUgCGCGg -3'
miRNA:   3'- cGCGG--UCGCUAUUCCGgaaUAA-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 42149 0.69 0.942933
Target:  5'- uUGUCGGCGc-GAGGCCUUGUUUGg- -3'
miRNA:   3'- cGCGGUCGCuaUUCCGGAAUAAGCgc -5'
24647 3' -51.9 NC_005264.1 + 128841 0.68 0.951759
Target:  5'- cGCgGCCGGCuacauGGGCCgccgcacGUUCGCGa -3'
miRNA:   3'- -CG-CGGUCGcuau-UCCGGaa-----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 60895 0.73 0.777631
Target:  5'- aCGCC-GCGGUGGGGCCgacgccgccaguUUCGCGc -3'
miRNA:   3'- cGCGGuCGCUAUUCCGGaau---------AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 64686 0.73 0.810982
Target:  5'- cUGCCGGCGGgcAGGCCgUGcUCGCc -3'
miRNA:   3'- cGCGGUCGCUauUCCGGaAUaAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.