miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 76205 0.68 0.96783
Target:  5'- gGCGCCcaacgcagaagagguGGCGAagaAAGGCUg---UCGCGa -3'
miRNA:   3'- -CGCGG---------------UCGCUa--UUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 1006 0.68 0.95962
Target:  5'- cGCGCCcguGUGGUGggggggcagGGGCCguucugUAUucUCGCGg -3'
miRNA:   3'- -CGCGGu--CGCUAU---------UCCGGa-----AUA--AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 63079 0.7 0.916516
Target:  5'- -aGCuCGGCGA--GGGCCg---UCGCGg -3'
miRNA:   3'- cgCG-GUCGCUauUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 60895 0.73 0.777631
Target:  5'- aCGCC-GCGGUGGGGCCgacgccgccaguUUCGCGc -3'
miRNA:   3'- cGCGGuCGCUAUUCCGGaau---------AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 11295 0.67 0.982255
Target:  5'- cGCGCCAG-GGUAGGGCgUcca-CGCc -3'
miRNA:   3'- -CGCGGUCgCUAUUCCGgAauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 37144 0.67 0.972597
Target:  5'- gGCGCCGGCGGUcucuCCaUGUUCGgGa -3'
miRNA:   3'- -CGCGGUCGCUAuuccGGaAUAAGCgC- -5'
24647 3' -51.9 NC_005264.1 + 162702 0.68 0.950072
Target:  5'- cGCGCCGGCGuUAAggcGGCCgccggggaGCGg -3'
miRNA:   3'- -CGCGGUCGCuAUU---CCGGaauaag--CGC- -5'
24647 3' -51.9 NC_005264.1 + 25423 0.73 0.773808
Target:  5'- uGCGCCAgGCGAUAcgauuGGCCU---UCGUGc -3'
miRNA:   3'- -CGCGGU-CGCUAUu----CCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 146882 0.67 0.972597
Target:  5'- aGCGCCAGUGGUugcguGGCUcg---CGCa -3'
miRNA:   3'- -CGCGGUCGCUAuu---CCGGaauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 145544 0.75 0.693717
Target:  5'- cGCGCUAGCGGUAAccguGGCCaccaUGUUUGCc -3'
miRNA:   3'- -CGCGGUCGCUAUU----CCGGa---AUAAGCGc -5'
24647 3' -51.9 NC_005264.1 + 128841 0.68 0.951759
Target:  5'- cGCgGCCGGCuacauGGGCCgccgcacGUUCGCGa -3'
miRNA:   3'- -CG-CGGUCGcuau-UCCGGaa-----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 87039 0.68 0.969682
Target:  5'- cUGCCGGgGGUcuGGCCUUcgucaacagcUUCGCGa -3'
miRNA:   3'- cGCGGUCgCUAuuCCGGAAu---------AAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 3860 0.69 0.940093
Target:  5'- uGCGCCGGgGAUuGGGCUgccccacgucuccgUcUUCGCGu -3'
miRNA:   3'- -CGCGGUCgCUAuUCCGGa-------------AuAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 132310 0.7 0.922301
Target:  5'- cGCGCCAGCGAggcGGGUCgugga-GCu -3'
miRNA:   3'- -CGCGGUCGCUau-UCCGGaauaagCGc -5'
24647 3' -51.9 NC_005264.1 + 118873 0.72 0.842959
Target:  5'- uGCGUCcucaucaccguucgGGCGGUAGGGCCUgaccacCGCGu -3'
miRNA:   3'- -CGCGG--------------UCGCUAUUCCGGAauaa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 158252 0.73 0.783325
Target:  5'- gGCGCUGGCGGggAGGGCCUgcGUUCcCGg -3'
miRNA:   3'- -CGCGGUCGCUa-UUCCGGAa-UAAGcGC- -5'
24647 3' -51.9 NC_005264.1 + 36551 0.66 0.984207
Target:  5'- cGCGCCcgaaAGCGGcauGGCCgccucCGCGg -3'
miRNA:   3'- -CGCGG----UCGCUauuCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 59993 0.67 0.982255
Target:  5'- cCGCgAGCGAgacGGCCgcgUGgcCGCGg -3'
miRNA:   3'- cGCGgUCGCUauuCCGGa--AUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 84846 0.67 0.977811
Target:  5'- uCGCCcGCGAUcgcGGCCUucgUAUcUCGCGc -3'
miRNA:   3'- cGCGGuCGCUAuu-CCGGA---AUA-AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 125705 0.67 0.974779
Target:  5'- gGCGCCAGCagcGAGGCCgagacggcCGCc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGaauaa---GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.