miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 393 0.72 0.853561
Target:  5'- aGCGCCGGCGc---GGUCguguaccUGUUCGCGu -3'
miRNA:   3'- -CGCGGUCGCuauuCCGGa------AUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 118873 0.72 0.842959
Target:  5'- uGCGUCcucaucaccguucgGGCGGUAGGGCCUgaccacCGCGu -3'
miRNA:   3'- -CGCGG--------------UCGCUAUUCCGGAauaa--GCGC- -5'
24647 3' -51.9 NC_005264.1 + 54339 0.66 0.987619
Target:  5'- aGCGCgCGGCGuuuAUGGcGaGCCUUAgaagcgUCGCGc -3'
miRNA:   3'- -CGCG-GUCGC---UAUU-C-CGGAAUa-----AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 146344 0.66 0.985993
Target:  5'- uGCGCCGGCG-UGccucgaccccgcAGGCCac---CGCGg -3'
miRNA:   3'- -CGCGGUCGCuAU------------UCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 36003 0.66 0.984207
Target:  5'- aCGCgCAGCGAcGAGGCgUUGccCGCc -3'
miRNA:   3'- cGCG-GUCGCUaUUCCGgAAUaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 135194 0.67 0.980125
Target:  5'- aGCGCC-GCGu---GGCCaaacgaGUUCGCGc -3'
miRNA:   3'- -CGCGGuCGCuauuCCGGaa----UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 16319 0.67 0.975305
Target:  5'- ----gAGUGAaagAAGGCCUUGUUUGCGc -3'
miRNA:   3'- cgcggUCGCUa--UUCCGGAAUAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 152976 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 73050 0.76 0.610129
Target:  5'- aGCGCCGGCGGUAugcGGCCagAgaCGUGg -3'
miRNA:   3'- -CGCGGUCGCUAUu--CCGGaaUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 131701 0.66 0.987619
Target:  5'- aGCG-UAGCGu--GGGCCUg---CGCGg -3'
miRNA:   3'- -CGCgGUCGCuauUCCGGAauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 130523 0.68 0.969682
Target:  5'- aCGCCGGCGAgauAGaCCUg---CGCGa -3'
miRNA:   3'- cGCGGUCGCUau-UCcGGAauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 78497 0.75 0.672957
Target:  5'- cGCGCCGgugcacGCGGUGAGGCCagUAaccaUCGCGc -3'
miRNA:   3'- -CGCGGU------CGCUAUUCCGGa-AUa---AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 127341 0.67 0.980125
Target:  5'- aCGuCCAGCGAUAccaaGCCg---UCGCGa -3'
miRNA:   3'- cGC-GGUCGCUAUuc--CGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 50306 0.67 0.980125
Target:  5'- -gGUCGGCGGUuacGGCCUggagcCGCGa -3'
miRNA:   3'- cgCGGUCGCUAuu-CCGGAauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 47859 0.67 0.980125
Target:  5'- aGCGCCGGCacgc--GCCUcaaGUUCGCGc -3'
miRNA:   3'- -CGCGGUCGcuauucCGGAa--UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 81799 0.68 0.96215
Target:  5'- cGCGCCAGUGAggguagacggcgggUAGGcGCCgcugGUUCGa- -3'
miRNA:   3'- -CGCGGUCGCU--------------AUUC-CGGaa--UAAGCgc -5'
24647 3' -51.9 NC_005264.1 + 140962 0.67 0.972597
Target:  5'- cGCGCCAGCuc---GGCCUUuuccUCGgGg -3'
miRNA:   3'- -CGCGGUCGcuauuCCGGAAua--AGCgC- -5'
24647 3' -51.9 NC_005264.1 + 42360 0.67 0.971745
Target:  5'- cCGCCGGCGAU--GGCCggugcuggcuccCGCGg -3'
miRNA:   3'- cGCGGUCGCUAuuCCGGaauaa-------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 43898 0.68 0.9632
Target:  5'- gGCGCCGGagaCGAUAGcgcGGCCg---UCGCc -3'
miRNA:   3'- -CGCGGUC---GCUAUU---CCGGaauaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 76942 0.68 0.9632
Target:  5'- aGCGCCuGCGuuacGAGGCCU--UUCaCGg -3'
miRNA:   3'- -CGCGGuCGCua--UUCCGGAauAAGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.