miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 3' -51.9 NC_005264.1 + 91561 0.67 0.975305
Target:  5'- cGCGgCGGgGGgcacGAGGCUUg--UCGCGg -3'
miRNA:   3'- -CGCgGUCgCUa---UUCCGGAauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 127341 0.67 0.980125
Target:  5'- aCGuCCAGCGAUAccaaGCCg---UCGCGa -3'
miRNA:   3'- cGC-GGUCGCUAUuc--CGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 50306 0.67 0.980125
Target:  5'- -gGUCGGCGGUuacGGCCUggagcCGCGa -3'
miRNA:   3'- cgCGGUCGCUAuu-CCGGAauaa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 47859 0.67 0.980125
Target:  5'- aGCGCCGGCacgc--GCCUcaaGUUCGCGc -3'
miRNA:   3'- -CGCGGUCGcuauucCGGAa--UAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 21347 0.67 0.980125
Target:  5'- uGCGCCGGggccgGAUGAGGCUgUAgcCGUGu -3'
miRNA:   3'- -CGCGGUCg----CUAUUCCGGaAUaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 72730 0.67 0.977811
Target:  5'- aCGCCAcGCGGUAcacuucggcGGGCCUguc-CGCu -3'
miRNA:   3'- cGCGGU-CGCUAU---------UCCGGAauaaGCGc -5'
24647 3' -51.9 NC_005264.1 + 121455 0.67 0.97708
Target:  5'- aGCGCgCGGCcuacgcguacauuaGA-GAGGCCguuUUCGCGg -3'
miRNA:   3'- -CGCG-GUCG--------------CUaUUCCGGaauAAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 53113 0.67 0.975564
Target:  5'- gGCGCuCGGCGAgggggccgagGAGGCCgggcaaucugcCGCGg -3'
miRNA:   3'- -CGCG-GUCGCUa---------UUCCGGaauaa------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 69671 0.67 0.975305
Target:  5'- aCG-CGGCGcUGGGGCCUUGguucucCGCGg -3'
miRNA:   3'- cGCgGUCGCuAUUCCGGAAUaa----GCGC- -5'
24647 3' -51.9 NC_005264.1 + 52882 0.67 0.980125
Target:  5'- cGCGCgAGCGA-GGGGCUg----CGUGg -3'
miRNA:   3'- -CGCGgUCGCUaUUCCGGaauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 160097 0.66 0.984207
Target:  5'- cGCGCUAGUuc-AAGGCCUaGUgaCGCGc -3'
miRNA:   3'- -CGCGGUCGcuaUUCCGGAaUAa-GCGC- -5'
24647 3' -51.9 NC_005264.1 + 33949 0.66 0.984941
Target:  5'- cGCGCCGGgaccgcgccCGAUAgGGGCCgcuugacccucUCGCGa -3'
miRNA:   3'- -CGCGGUC---------GCUAU-UCCGGaaua-------AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 54462 0.66 0.990432
Target:  5'- cCGCCgAGCuGGUAAGGgCCgUcgUCGCc -3'
miRNA:   3'- cGCGG-UCG-CUAUUCC-GGaAuaAGCGc -5'
24647 3' -51.9 NC_005264.1 + 6848 0.66 0.990304
Target:  5'- gGCGCCAGCGcgcaaccucugucGUGcGGgCUUGUUucucggCGCGu -3'
miRNA:   3'- -CGCGGUCGC-------------UAUuCCgGAAUAA------GCGC- -5'
24647 3' -51.9 NC_005264.1 + 25529 0.66 0.989096
Target:  5'- aGCGCCcauaaGGCGGcgcggacAAGGCgCUUG-UCGCGc -3'
miRNA:   3'- -CGCGG-----UCGCUa------UUCCG-GAAUaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 123494 0.66 0.989096
Target:  5'- -gGCCGcGCGGUugcuGGGCgaUGUgcUCGCGg -3'
miRNA:   3'- cgCGGU-CGCUAu---UCCGgaAUA--AGCGC- -5'
24647 3' -51.9 NC_005264.1 + 28068 0.66 0.988227
Target:  5'- uGCGCCAuGCGAccgucuucgucaaagUcAGGCgUUAUUgCGCa -3'
miRNA:   3'- -CGCGGU-CGCU---------------AuUCCGgAAUAA-GCGc -5'
24647 3' -51.9 NC_005264.1 + 131701 0.66 0.987619
Target:  5'- aGCG-UAGCGu--GGGCCUg---CGCGg -3'
miRNA:   3'- -CGCgGUCGCuauUCCGGAauaaGCGC- -5'
24647 3' -51.9 NC_005264.1 + 2829 0.66 0.985993
Target:  5'- cGgGUUGGCGG-AGGGCCgg--UCGCGc -3'
miRNA:   3'- -CgCGGUCGCUaUUCCGGaauaAGCGC- -5'
24647 3' -51.9 NC_005264.1 + 70097 0.66 0.985993
Target:  5'- aGCuGUCGGCGcgGAGGaCCUUAUcgagcugcCGCGu -3'
miRNA:   3'- -CG-CGGUCGCuaUUCC-GGAAUAa-------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.