miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 100279 0.66 0.806884
Target:  5'- aUCCGCGCAgcGGGC--UCGGcuUGCUGGa- -3'
miRNA:   3'- -GGGCGCGU--UCCGgcAGCC--AUGACCgc -5'
24647 5' -59.9 NC_005264.1 + 126784 0.66 0.806884
Target:  5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3'
miRNA:   3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 154816 0.66 0.806884
Target:  5'- -gCGCGguGGcGCCGUCGugGCgGGCGc -3'
miRNA:   3'- ggGCGCguUC-CGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 35015 0.66 0.806884
Target:  5'- gCCGCGgAGGcaacGCUGUCGGgagaUGGCu -3'
miRNA:   3'- gGGCGCgUUC----CGGCAGCCaug-ACCGc -5'
24647 5' -59.9 NC_005264.1 + 7758 0.66 0.806884
Target:  5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3'
miRNA:   3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 35790 0.66 0.806884
Target:  5'- -gCGCGguGGcGCCGUCGugGCgGGCGc -3'
miRNA:   3'- ggGCGCguUC-CGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 146577 0.66 0.806036
Target:  5'- gCCGCGCcucAGGCgaugUGUCGGUACUcucagaacugggaGGgGg -3'
miRNA:   3'- gGGCGCGu--UCCG----GCAGCCAUGA-------------CCgC- -5'
24647 5' -59.9 NC_005264.1 + 77003 0.66 0.79834
Target:  5'- -gCGCGCAAGaCC--CGGUACUGaGCGc -3'
miRNA:   3'- ggGCGCGUUCcGGcaGCCAUGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 134151 0.66 0.793146
Target:  5'- aCCGCGCGagccaaagguGGGCCGUucgucgauccuauacCccGGUACacgGGCGa -3'
miRNA:   3'- gGGCGCGU----------UCCGGCA---------------G--CCAUGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 114215 0.66 0.789657
Target:  5'- aCCCGCGCAAGGUUugaagCGGUACc---- -3'
miRNA:   3'- -GGGCGCGUUCCGGca---GCCAUGaccgc -5'
24647 5' -59.9 NC_005264.1 + 59465 0.66 0.780845
Target:  5'- cCCCGCGCGgcAGGCaUGaCG--ACUGGCa -3'
miRNA:   3'- -GGGCGCGU--UCCG-GCaGCcaUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 84320 0.66 0.762859
Target:  5'- aCCGgGCAcGGCgCGaUGGuUACUGGCc -3'
miRNA:   3'- gGGCgCGUuCCG-GCaGCC-AUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 161945 0.66 0.762859
Target:  5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3'
miRNA:   3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5'
24647 5' -59.9 NC_005264.1 + 42918 0.66 0.762859
Target:  5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3'
miRNA:   3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5'
24647 5' -59.9 NC_005264.1 + 74242 0.67 0.757378
Target:  5'- -gCGCGCu-GGCCGcgcuccagacacggCGGUAgaGGCGg -3'
miRNA:   3'- ggGCGCGuuCCGGCa-------------GCCAUgaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 52886 0.67 0.744448
Target:  5'- aCCUGCcauaGCAGGGCCGUaaGGU-C-GGCGa -3'
miRNA:   3'- -GGGCG----CGUUCCGGCAg-CCAuGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 75228 0.67 0.744448
Target:  5'- cCCUGCGCGGcGGCCGUCuuGUAUaacGCGa -3'
miRNA:   3'- -GGGCGCGUU-CCGGCAGc-CAUGac-CGC- -5'
24647 5' -59.9 NC_005264.1 + 156694 0.67 0.744448
Target:  5'- gCCCGCGCGagacccAGGaCGggCGGUGCUucGCGa -3'
miRNA:   3'- -GGGCGCGU------UCCgGCa-GCCAUGAc-CGC- -5'
24647 5' -59.9 NC_005264.1 + 78516 0.67 0.735102
Target:  5'- aCCGCGCuGGGUaCG-CGccGCUGGCGu -3'
miRNA:   3'- gGGCGCGuUCCG-GCaGCcaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 116393 0.67 0.735102
Target:  5'- gCCGCGCAaaagccgcAGGCCGacgUCGaGcGCagGGCGg -3'
miRNA:   3'- gGGCGCGU--------UCCGGC---AGC-CaUGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.