miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 89125 1.1 0.001474
Target:  5'- aCCCGCGCAAGGCCGUCGGUACUGGCGc -3'
miRNA:   3'- -GGGCGCGUUCCGGCAGCCAUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 22287 0.78 0.208568
Target:  5'- uCUCGCcaGCAGGGUCGUCGGUAggauagcuguaguCUGGCGc -3'
miRNA:   3'- -GGGCG--CGUUCCGGCAGCCAU-------------GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 62227 0.77 0.229144
Target:  5'- cUCCGCGgccgcuuCGGGGUCGUCGGUAUccuUGGCGa -3'
miRNA:   3'- -GGGCGC-------GUUCCGGCAGCCAUG---ACCGC- -5'
24647 5' -59.9 NC_005264.1 + 104960 0.77 0.240619
Target:  5'- aUCCGCGCcauGGCCGcCGGUGCcgccgucucUGGCGc -3'
miRNA:   3'- -GGGCGCGuu-CCGGCaGCCAUG---------ACCGC- -5'
24647 5' -59.9 NC_005264.1 + 114756 0.76 0.282346
Target:  5'- aCCCGCGC--GGCCG-CGGUAUUGcGCu -3'
miRNA:   3'- -GGGCGCGuuCCGGCaGCCAUGAC-CGc -5'
24647 5' -59.9 NC_005264.1 + 87626 0.75 0.318309
Target:  5'- gCCGCGCAGGGCCgaugcagccgcguggGgcgCGGgacCUGGCGg -3'
miRNA:   3'- gGGCGCGUUCCGG---------------Ca--GCCau-GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 146777 0.73 0.398552
Target:  5'- gCCGCGCGGcGGUUcUCGGUGC-GGCGg -3'
miRNA:   3'- gGGCGCGUU-CCGGcAGCCAUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 13805 0.73 0.398552
Target:  5'- aCCCGgGCAggGGGCUGUgGG-ACgUGGCGu -3'
miRNA:   3'- -GGGCgCGU--UCCGGCAgCCaUG-ACCGC- -5'
24647 5' -59.9 NC_005264.1 + 136791 0.73 0.41508
Target:  5'- uUCgGCGCGuGGCCGggCGGacaaaGCUGGCGg -3'
miRNA:   3'- -GGgCGCGUuCCGGCa-GCCa----UGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 99921 0.72 0.432022
Target:  5'- gCCGCGCAAGcCCGcgCGGcuaaGCUGGUGg -3'
miRNA:   3'- gGGCGCGUUCcGGCa-GCCa---UGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 82854 0.71 0.476068
Target:  5'- uUCCGCGC--GGCCGgcaUCGGUcucuguuuGCUGGCc -3'
miRNA:   3'- -GGGCGCGuuCCGGC---AGCCA--------UGACCGc -5'
24647 5' -59.9 NC_005264.1 + 57988 0.71 0.484234
Target:  5'- cCCCGCGCGGcGGCCGUggcucagCGGccCcGGCGg -3'
miRNA:   3'- -GGGCGCGUU-CCGGCA-------GCCauGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 6824 0.71 0.485145
Target:  5'- aCCGCGCAAGcGUCGcCGGgcguaccuUGCUGGUu -3'
miRNA:   3'- gGGCGCGUUC-CGGCaGCC--------AUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 97993 0.71 0.512853
Target:  5'- aCCCGCGCAccgGGGauccaGUacgcaUGGUGCUGGCc -3'
miRNA:   3'- -GGGCGCGU---UCCgg---CA-----GCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 98794 0.71 0.512853
Target:  5'- gCUGCGCGAGaUCGgguaucggCGGUGCUGGUGc -3'
miRNA:   3'- gGGCGCGUUCcGGCa-------GCCAUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 42358 0.7 0.531681
Target:  5'- cCCCGCcgGCGAuGGCC---GGUGCUGGCu -3'
miRNA:   3'- -GGGCG--CGUU-CCGGcagCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 161385 0.7 0.531681
Target:  5'- cCCCGCcgGCGAuGGCC---GGUGCUGGCu -3'
miRNA:   3'- -GGGCG--CGUU-CCGGcagCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 35149 0.7 0.541189
Target:  5'- cCCCG-GCcuGGCCG-CGGUGuguCUGGUGg -3'
miRNA:   3'- -GGGCgCGuuCCGGCaGCCAU---GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 54908 0.7 0.541189
Target:  5'- uCCaCGCG-AAGGUCG-CGGcgcUGCUGGCGa -3'
miRNA:   3'- -GG-GCGCgUUCCGGCaGCC---AUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 52417 0.7 0.550753
Target:  5'- cCCCGgGCGAccuGGCCGagaaGUACUGGCu -3'
miRNA:   3'- -GGGCgCGUU---CCGGCagc-CAUGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.