miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 30528 0.67 0.729454
Target:  5'- uCUCGCGCAGuuuGGCCGaccgCGGUgucgcgaucacuucuACcGGCGg -3'
miRNA:   3'- -GGGCGCGUU---CCGGCa---GCCA---------------UGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 158234 0.67 0.725674
Target:  5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3'
miRNA:   3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 39207 0.67 0.725674
Target:  5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3'
miRNA:   3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 98573 0.67 0.719981
Target:  5'- aCCCGCGUAgccagccucaccgauAGGCUGcUGGUGuucUUGGUGg -3'
miRNA:   3'- -GGGCGCGU---------------UCCGGCaGCCAU---GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 22723 0.67 0.716172
Target:  5'- -gCGCGCAAGcgugugucuGCUGccCGGUGCUgGGCGa -3'
miRNA:   3'- ggGCGCGUUC---------CGGCa-GCCAUGA-CCGC- -5'
24647 5' -59.9 NC_005264.1 + 156124 0.67 0.716172
Target:  5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3'
miRNA:   3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 27162 0.67 0.716172
Target:  5'- gUCCGUGC-AGGCCGUCuucAC-GGCGg -3'
miRNA:   3'- -GGGCGCGuUCCGGCAGccaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 143741 0.67 0.716172
Target:  5'- cUCCGCGCc--GCCG-CGGUGCaguccUGGCu -3'
miRNA:   3'- -GGGCGCGuucCGGCaGCCAUG-----ACCGc -5'
24647 5' -59.9 NC_005264.1 + 37097 0.67 0.716172
Target:  5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3'
miRNA:   3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 103389 0.68 0.696978
Target:  5'- gCCGCGCGGGGCCGcuuugacaaaUC-GUAC-GGUGc -3'
miRNA:   3'- gGGCGCGUUCCGGC----------AGcCAUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 108609 0.68 0.696978
Target:  5'- -gCGCGCGGGGCCGccucgacacaGGccucUAUUGGCGa -3'
miRNA:   3'- ggGCGCGUUCCGGCag--------CC----AUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 7985 0.68 0.677584
Target:  5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3'
miRNA:   3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5'
24647 5' -59.9 NC_005264.1 + 76358 0.68 0.677584
Target:  5'- aCUGCGCGcAGGCgCGUUGGUACccGCu -3'
miRNA:   3'- gGGCGCGU-UCCG-GCAGCCAUGacCGc -5'
24647 5' -59.9 NC_005264.1 + 127012 0.68 0.677584
Target:  5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3'
miRNA:   3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5'
24647 5' -59.9 NC_005264.1 + 123805 0.68 0.666855
Target:  5'- aCCGUGUAAGGCgagucacCGcCGGUACUuucuguuuGGCGc -3'
miRNA:   3'- gGGCGCGUUCCG-------GCaGCCAUGA--------CCGC- -5'
24647 5' -59.9 NC_005264.1 + 4069 0.68 0.658053
Target:  5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3'
miRNA:   3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 123096 0.68 0.658053
Target:  5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3'
miRNA:   3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 122639 0.69 0.628631
Target:  5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3'
miRNA:   3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 3612 0.69 0.628631
Target:  5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3'
miRNA:   3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 18311 0.69 0.615877
Target:  5'- gUUGCGCGAGGCCGUcCGucuauugcuaucucGUcccccaACUGGCGa -3'
miRNA:   3'- gGGCGCGUUCCGGCA-GC--------------CA------UGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.