miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 3612 0.69 0.628631
Target:  5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3'
miRNA:   3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 4069 0.68 0.658053
Target:  5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3'
miRNA:   3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 6824 0.71 0.485145
Target:  5'- aCCGCGCAAGcGUCGcCGGgcguaccuUGCUGGUu -3'
miRNA:   3'- gGGCGCGUUC-CGGCaGCC--------AUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 7758 0.66 0.806884
Target:  5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3'
miRNA:   3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 7985 0.68 0.677584
Target:  5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3'
miRNA:   3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5'
24647 5' -59.9 NC_005264.1 + 13805 0.73 0.398552
Target:  5'- aCCCGgGCAggGGGCUGUgGG-ACgUGGCGu -3'
miRNA:   3'- -GGGCgCGU--UCCGGCAgCCaUG-ACCGC- -5'
24647 5' -59.9 NC_005264.1 + 18311 0.69 0.615877
Target:  5'- gUUGCGCGAGGCCGUcCGucuauugcuaucucGUcccccaACUGGCGa -3'
miRNA:   3'- gGGCGCGUUCCGGCA-GC--------------CA------UGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 22287 0.78 0.208568
Target:  5'- uCUCGCcaGCAGGGUCGUCGGUAggauagcuguaguCUGGCGc -3'
miRNA:   3'- -GGGCG--CGUUCCGGCAGCCAU-------------GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 22723 0.67 0.716172
Target:  5'- -gCGCGCAAGcgugugucuGCUGccCGGUGCUgGGCGa -3'
miRNA:   3'- ggGCGCGUUC---------CGGCa-GCCAUGA-CCGC- -5'
24647 5' -59.9 NC_005264.1 + 27162 0.67 0.716172
Target:  5'- gUCCGUGC-AGGCCGUCuucAC-GGCGg -3'
miRNA:   3'- -GGGCGCGuUCCGGCAGccaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 30528 0.67 0.729454
Target:  5'- uCUCGCGCAGuuuGGCCGaccgCGGUgucgcgaucacuucuACcGGCGg -3'
miRNA:   3'- -GGGCGCGUU---CCGGCa---GCCA---------------UGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 31524 0.69 0.609017
Target:  5'- gCUCGgGCGgggaGGGCCGUUGGggugggGGCGg -3'
miRNA:   3'- -GGGCgCGU----UCCGGCAGCCauga--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 35015 0.66 0.806884
Target:  5'- gCCGCGgAGGcaacGCUGUCGGgagaUGGCu -3'
miRNA:   3'- gGGCGCgUUC----CGGCAGCCaug-ACCGc -5'
24647 5' -59.9 NC_005264.1 + 35149 0.7 0.541189
Target:  5'- cCCCG-GCcuGGCCG-CGGUGuguCUGGUGg -3'
miRNA:   3'- -GGGCgCGuuCCGGCaGCCAU---GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 35790 0.66 0.806884
Target:  5'- -gCGCGguGGcGCCGUCGugGCgGGCGc -3'
miRNA:   3'- ggGCGCguUC-CGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 37097 0.67 0.716172
Target:  5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3'
miRNA:   3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 39207 0.67 0.725674
Target:  5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3'
miRNA:   3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 42358 0.7 0.531681
Target:  5'- cCCCGCcgGCGAuGGCC---GGUGCUGGCu -3'
miRNA:   3'- -GGGCG--CGUU-CCGGcagCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 42918 0.66 0.762859
Target:  5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3'
miRNA:   3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5'
24647 5' -59.9 NC_005264.1 + 45767 0.69 0.59923
Target:  5'- cCCUGCGCGGGGCgCG-CGG-AgUGGgGa -3'
miRNA:   3'- -GGGCGCGUUCCG-GCaGCCaUgACCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.