miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 52417 0.7 0.550753
Target:  5'- cCCCGgGCGAccuGGCCGagaaGUACUGGCu -3'
miRNA:   3'- -GGGCgCGUU---CCGGCagc-CAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 52886 0.67 0.744448
Target:  5'- aCCUGCcauaGCAGGGCCGUaaGGU-C-GGCGa -3'
miRNA:   3'- -GGGCG----CGUUCCGGCAg-CCAuGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 54908 0.7 0.541189
Target:  5'- uCCaCGCG-AAGGUCG-CGGcgcUGCUGGCGa -3'
miRNA:   3'- -GG-GCGCgUUCCGGCaGCC---AUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 57988 0.71 0.484234
Target:  5'- cCCCGCGCGGcGGCCGUggcucagCGGccCcGGCGg -3'
miRNA:   3'- -GGGCGCGUU-CCGGCA-------GCCauGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 59465 0.66 0.780845
Target:  5'- cCCCGCGCGgcAGGCaUGaCG--ACUGGCa -3'
miRNA:   3'- -GGGCGCGU--UCCG-GCaGCcaUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 62227 0.77 0.229144
Target:  5'- cUCCGCGgccgcuuCGGGGUCGUCGGUAUccuUGGCGa -3'
miRNA:   3'- -GGGCGC-------GUUCCGGCAGCCAUG---ACCGC- -5'
24647 5' -59.9 NC_005264.1 + 74242 0.67 0.757378
Target:  5'- -gCGCGCu-GGCCGcgcuccagacacggCGGUAgaGGCGg -3'
miRNA:   3'- ggGCGCGuuCCGGCa-------------GCCAUgaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 75228 0.67 0.744448
Target:  5'- cCCUGCGCGGcGGCCGUCuuGUAUaacGCGa -3'
miRNA:   3'- -GGGCGCGUU-CCGGCAGc-CAUGac-CGC- -5'
24647 5' -59.9 NC_005264.1 + 76358 0.68 0.677584
Target:  5'- aCUGCGCGcAGGCgCGUUGGUACccGCu -3'
miRNA:   3'- gGGCGCGU-UCCG-GCAGCCAUGacCGc -5'
24647 5' -59.9 NC_005264.1 + 77003 0.66 0.79834
Target:  5'- -gCGCGCAAGaCC--CGGUACUGaGCGc -3'
miRNA:   3'- ggGCGCGUUCcGGcaGCCAUGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 78516 0.67 0.735102
Target:  5'- aCCGCGCuGGGUaCG-CGccGCUGGCGu -3'
miRNA:   3'- gGGCGCGuUCCG-GCaGCcaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 80342 0.7 0.570029
Target:  5'- cUCCGCGC-GGGUCGggUCGGuUGgaGGCGg -3'
miRNA:   3'- -GGGCGCGuUCCGGC--AGCC-AUgaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 82854 0.71 0.476068
Target:  5'- uUCCGCGC--GGCCGgcaUCGGUcucuguuuGCUGGCc -3'
miRNA:   3'- -GGGCGCGuuCCGGC---AGCCA--------UGACCGc -5'
24647 5' -59.9 NC_005264.1 + 84320 0.66 0.762859
Target:  5'- aCCGgGCAcGGCgCGaUGGuUACUGGCc -3'
miRNA:   3'- gGGCgCGUuCCG-GCaGCC-AUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 87626 0.75 0.318309
Target:  5'- gCCGCGCAGGGCCgaugcagccgcguggGgcgCGGgacCUGGCGg -3'
miRNA:   3'- gGGCGCGUUCCGG---------------Ca--GCCau-GACCGC- -5'
24647 5' -59.9 NC_005264.1 + 89125 1.1 0.001474
Target:  5'- aCCCGCGCAAGGCCGUCGGUACUGGCGc -3'
miRNA:   3'- -GGGCGCGUUCCGGCAGCCAUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 93840 0.7 0.550753
Target:  5'- aUgGCGaCAGGGCCG-CGGgccACUGGCc -3'
miRNA:   3'- gGgCGC-GUUCCGGCaGCCa--UGACCGc -5'
24647 5' -59.9 NC_005264.1 + 95820 0.7 0.550753
Target:  5'- gCCUGCGCAAGGCCGcCGcuccGUcCaGGCa -3'
miRNA:   3'- -GGGCGCGUUCCGGCaGC----CAuGaCCGc -5'
24647 5' -59.9 NC_005264.1 + 97993 0.71 0.512853
Target:  5'- aCCCGCGCAccgGGGauccaGUacgcaUGGUGCUGGCc -3'
miRNA:   3'- -GGGCGCGU---UCCgg---CA-----GCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 98573 0.67 0.719981
Target:  5'- aCCCGCGUAgccagccucaccgauAGGCUGcUGGUGuucUUGGUGg -3'
miRNA:   3'- -GGGCGCGU---------------UCCGGCaGCCAU---GACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.