miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24647 5' -59.9 NC_005264.1 + 161945 0.66 0.762859
Target:  5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3'
miRNA:   3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5'
24647 5' -59.9 NC_005264.1 + 161385 0.7 0.531681
Target:  5'- cCCCGCcgGCGAuGGCC---GGUGCUGGCu -3'
miRNA:   3'- -GGGCG--CGUU-CCGGcagCCAUGACCGc -5'
24647 5' -59.9 NC_005264.1 + 158234 0.67 0.725674
Target:  5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3'
miRNA:   3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 156694 0.67 0.744448
Target:  5'- gCCCGCGCGagacccAGGaCGggCGGUGCUucGCGa -3'
miRNA:   3'- -GGGCGCGU------UCCgGCa-GCCAUGAc-CGC- -5'
24647 5' -59.9 NC_005264.1 + 156124 0.67 0.716172
Target:  5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3'
miRNA:   3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 154816 0.66 0.806884
Target:  5'- -gCGCGguGGcGCCGUCGugGCgGGCGc -3'
miRNA:   3'- ggGCGCguUC-CGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 150551 0.69 0.609017
Target:  5'- gCUCGgGCGgggaGGGCCGUUGGggugggGGCGg -3'
miRNA:   3'- -GGGCgCGU----UCCGGCAGCCauga--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 146777 0.73 0.398552
Target:  5'- gCCGCGCGGcGGUUcUCGGUGC-GGCGg -3'
miRNA:   3'- gGGCGCGUU-CCGGcAGCCAUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 146577 0.66 0.806036
Target:  5'- gCCGCGCcucAGGCgaugUGUCGGUACUcucagaacugggaGGgGg -3'
miRNA:   3'- gGGCGCGu--UCCG----GCAGCCAUGA-------------CCgC- -5'
24647 5' -59.9 NC_005264.1 + 143741 0.67 0.716172
Target:  5'- cUCCGCGCc--GCCG-CGGUGCaguccUGGCu -3'
miRNA:   3'- -GGGCGCGuucCGGCaGCCAUG-----ACCGc -5'
24647 5' -59.9 NC_005264.1 + 136791 0.73 0.41508
Target:  5'- uUCgGCGCGuGGCCGggCGGacaaaGCUGGCGg -3'
miRNA:   3'- -GGgCGCGUuCCGGCa-GCCa----UGACCGC- -5'
24647 5' -59.9 NC_005264.1 + 134151 0.66 0.793146
Target:  5'- aCCGCGCGagccaaagguGGGCCGUucgucgauccuauacCccGGUACacgGGCGa -3'
miRNA:   3'- gGGCGCGU----------UCCGGCA---------------G--CCAUGa--CCGC- -5'
24647 5' -59.9 NC_005264.1 + 133984 0.69 0.609017
Target:  5'- gCCCGCGC-GGGCCGuuuacgauuucuUCGuUGcCUGGCa -3'
miRNA:   3'- -GGGCGCGuUCCGGC------------AGCcAU-GACCGc -5'
24647 5' -59.9 NC_005264.1 + 127012 0.68 0.677584
Target:  5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3'
miRNA:   3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5'
24647 5' -59.9 NC_005264.1 + 126784 0.66 0.806884
Target:  5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3'
miRNA:   3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5'
24647 5' -59.9 NC_005264.1 + 123805 0.68 0.666855
Target:  5'- aCCGUGUAAGGCgagucacCGcCGGUACUuucuguuuGGCGc -3'
miRNA:   3'- gGGCGCGUUCCG-------GCaGCCAUGA--------CCGC- -5'
24647 5' -59.9 NC_005264.1 + 123096 0.68 0.658053
Target:  5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3'
miRNA:   3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 122639 0.69 0.628631
Target:  5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3'
miRNA:   3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5'
24647 5' -59.9 NC_005264.1 + 116393 0.67 0.735102
Target:  5'- gCCGCGCAaaagccgcAGGCCGacgUCGaGcGCagGGCGg -3'
miRNA:   3'- gGGCGCGU--------UCCGGC---AGC-CaUGa-CCGC- -5'
24647 5' -59.9 NC_005264.1 + 114756 0.76 0.282346
Target:  5'- aCCCGCGC--GGCCG-CGGUAUUGcGCu -3'
miRNA:   3'- -GGGCGCGuuCCGGCaGCCAUGAC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.