Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24647 | 5' | -59.9 | NC_005264.1 | + | 89125 | 1.1 | 0.001474 |
Target: 5'- aCCCGCGCAAGGCCGUCGGUACUGGCGc -3' miRNA: 3'- -GGGCGCGUUCCGGCAGCCAUGACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 133984 | 0.69 | 0.609017 |
Target: 5'- gCCCGCGC-GGGCCGuuuacgauuucuUCGuUGcCUGGCa -3' miRNA: 3'- -GGGCGCGuUCCGGC------------AGCcAU-GACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 123096 | 0.68 | 0.658053 |
Target: 5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3' miRNA: 3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 126784 | 0.66 | 0.806884 |
Target: 5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3' miRNA: 3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 13805 | 0.73 | 0.398552 |
Target: 5'- aCCCGgGCAggGGGCUGUgGG-ACgUGGCGu -3' miRNA: 3'- -GGGCgCGU--UCCGGCAgCCaUG-ACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 146777 | 0.73 | 0.398552 |
Target: 5'- gCCGCGCGGcGGUUcUCGGUGC-GGCGg -3' miRNA: 3'- gGGCGCGUU-CCGGcAGCCAUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 82854 | 0.71 | 0.476068 |
Target: 5'- uUCCGCGC--GGCCGgcaUCGGUcucuguuuGCUGGCc -3' miRNA: 3'- -GGGCGCGuuCCGGC---AGCCA--------UGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 57988 | 0.71 | 0.484234 |
Target: 5'- cCCCGCGCGGcGGCCGUggcucagCGGccCcGGCGg -3' miRNA: 3'- -GGGCGCGUU-CCGGCA-------GCCauGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 161385 | 0.7 | 0.531681 |
Target: 5'- cCCCGCcgGCGAuGGCC---GGUGCUGGCu -3' miRNA: 3'- -GGGCG--CGUU-CCGGcagCCAUGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 150551 | 0.69 | 0.609017 |
Target: 5'- gCUCGgGCGgggaGGGCCGUUGGggugggGGCGg -3' miRNA: 3'- -GGGCgCGU----UCCGGCAGCCauga--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 93840 | 0.7 | 0.550753 |
Target: 5'- aUgGCGaCAGGGCCG-CGGgccACUGGCc -3' miRNA: 3'- gGgCGC-GUUCCGGCaGCCa--UGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 97993 | 0.71 | 0.512853 |
Target: 5'- aCCCGCGCAccgGGGauccaGUacgcaUGGUGCUGGCc -3' miRNA: 3'- -GGGCGCGU---UCCgg---CA-----GCCAUGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 62227 | 0.77 | 0.229144 |
Target: 5'- cUCCGCGgccgcuuCGGGGUCGUCGGUAUccuUGGCGa -3' miRNA: 3'- -GGGCGC-------GUUCCGGCAGCCAUG---ACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 80342 | 0.7 | 0.570029 |
Target: 5'- cUCCGCGC-GGGUCGggUCGGuUGgaGGCGg -3' miRNA: 3'- -GGGCGCGuUCCGGC--AGCC-AUgaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 104960 | 0.77 | 0.240619 |
Target: 5'- aUCCGCGCcauGGCCGcCGGUGCcgccgucucUGGCGc -3' miRNA: 3'- -GGGCGCGuu-CCGGCaGCCAUG---------ACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 6824 | 0.71 | 0.485145 |
Target: 5'- aCCGCGCAAGcGUCGcCGGgcguaccuUGCUGGUu -3' miRNA: 3'- gGGCGCGUUC-CGGCaGCC--------AUGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 45767 | 0.69 | 0.59923 |
Target: 5'- cCCUGCGCGGGGCgCG-CGG-AgUGGgGa -3' miRNA: 3'- -GGGCGCGUUCCG-GCaGCCaUgACCgC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 122639 | 0.69 | 0.628631 |
Target: 5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3' miRNA: 3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 114756 | 0.76 | 0.282346 |
Target: 5'- aCCCGCGC--GGCCG-CGGUAUUGcGCu -3' miRNA: 3'- -GGGCGCGuuCCGGCaGCCAUGAC-CGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 136791 | 0.73 | 0.41508 |
Target: 5'- uUCgGCGCGuGGCCGggCGGacaaaGCUGGCGg -3' miRNA: 3'- -GGgCGCGUuCCGGCa-GCCa----UGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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