Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24647 | 5' | -59.9 | NC_005264.1 | + | 156124 | 0.67 | 0.716172 |
Target: 5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3' miRNA: 3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 123096 | 0.68 | 0.658053 |
Target: 5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3' miRNA: 3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 150551 | 0.69 | 0.609017 |
Target: 5'- gCUCGgGCGgggaGGGCCGUUGGggugggGGCGg -3' miRNA: 3'- -GGGCgCGU----UCCGGCAGCCauga--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 35015 | 0.66 | 0.806884 |
Target: 5'- gCCGCGgAGGcaacGCUGUCGGgagaUGGCu -3' miRNA: 3'- gGGCGCgUUC----CGGCAGCCaug-ACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 75228 | 0.67 | 0.744448 |
Target: 5'- cCCUGCGCGGcGGCCGUCuuGUAUaacGCGa -3' miRNA: 3'- -GGGCGCGUU-CCGGCAGc-CAUGac-CGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 108609 | 0.68 | 0.696978 |
Target: 5'- -gCGCGCGGGGCCGccucgacacaGGccucUAUUGGCGa -3' miRNA: 3'- ggGCGCGUUCCGGCag--------CC----AUGACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 45767 | 0.69 | 0.59923 |
Target: 5'- cCCUGCGCGGGGCgCG-CGG-AgUGGgGa -3' miRNA: 3'- -GGGCGCGUUCCG-GCaGCCaUgACCgC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 52886 | 0.67 | 0.744448 |
Target: 5'- aCCUGCcauaGCAGGGCCGUaaGGU-C-GGCGa -3' miRNA: 3'- -GGGCG----CGUUCCGGCAg-CCAuGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 80342 | 0.7 | 0.570029 |
Target: 5'- cUCCGCGC-GGGUCGggUCGGuUGgaGGCGg -3' miRNA: 3'- -GGGCGCGuUCCGGC--AGCC-AUgaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 27162 | 0.67 | 0.716172 |
Target: 5'- gUCCGUGC-AGGCCGUCuucAC-GGCGg -3' miRNA: 3'- -GGGCGCGuUCCGGCAGccaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 158234 | 0.67 | 0.725674 |
Target: 5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3' miRNA: 3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 161945 | 0.66 | 0.762859 |
Target: 5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3' miRNA: 3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 127012 | 0.68 | 0.677584 |
Target: 5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3' miRNA: 3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 76358 | 0.68 | 0.677584 |
Target: 5'- aCUGCGCGcAGGCgCGUUGGUACccGCu -3' miRNA: 3'- gGGCGCGU-UCCG-GCAGCCAUGacCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 122639 | 0.69 | 0.628631 |
Target: 5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3' miRNA: 3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 133984 | 0.69 | 0.609017 |
Target: 5'- gCCCGCGC-GGGCCGuuuacgauuucuUCGuUGcCUGGCa -3' miRNA: 3'- -GGGCGCGuUCCGGC------------AGCcAU-GACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 126784 | 0.66 | 0.806884 |
Target: 5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3' miRNA: 3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 134151 | 0.66 | 0.793146 |
Target: 5'- aCCGCGCGagccaaagguGGGCCGUucgucgauccuauacCccGGUACacgGGCGa -3' miRNA: 3'- gGGCGCGU----------UCCGGCA---------------G--CCAUGa--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 93840 | 0.7 | 0.550753 |
Target: 5'- aUgGCGaCAGGGCCG-CGGgccACUGGCc -3' miRNA: 3'- gGgCGC-GUUCCGGCaGCCa--UGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 7985 | 0.68 | 0.677584 |
Target: 5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3' miRNA: 3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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