Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24647 | 5' | -59.9 | NC_005264.1 | + | 52417 | 0.7 | 0.550753 |
Target: 5'- cCCCGgGCGAccuGGCCGagaaGUACUGGCu -3' miRNA: 3'- -GGGCgCGUU---CCGGCagc-CAUGACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 37097 | 0.67 | 0.716172 |
Target: 5'- gCCCGCcCAAGGUgGUgGGcaggACgagGGCGa -3' miRNA: 3'- -GGGCGcGUUCCGgCAgCCa---UGa--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 103389 | 0.68 | 0.696978 |
Target: 5'- gCCGCGCGGGGCCGcuuugacaaaUC-GUAC-GGUGc -3' miRNA: 3'- gGGCGCGUUCCGGC----------AGcCAUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 7985 | 0.68 | 0.677584 |
Target: 5'- gUCCGUGCAcGGGCCGccauugCGGgGCcGGCa -3' miRNA: 3'- -GGGCGCGU-UCCGGCa-----GCCaUGaCCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 123805 | 0.68 | 0.666855 |
Target: 5'- aCCGUGUAAGGCgagucacCGcCGGUACUuucuguuuGGCGc -3' miRNA: 3'- gGGCGCGUUCCG-------GCaGCCAUGA--------CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 4069 | 0.68 | 0.658053 |
Target: 5'- uCCCGacaGCGGGGCUGUUGc-ACgGGCGg -3' miRNA: 3'- -GGGCg--CGUUCCGGCAGCcaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 3612 | 0.69 | 0.628631 |
Target: 5'- gCCGCGgGGGGCCG-CGaGgGCgGGCGc -3' miRNA: 3'- gGGCGCgUUCCGGCaGC-CaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 18311 | 0.69 | 0.615877 |
Target: 5'- gUUGCGCGAGGCCGUcCGucuauugcuaucucGUcccccaACUGGCGa -3' miRNA: 3'- gGGCGCGUUCCGGCA-GC--------------CA------UGACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 31524 | 0.69 | 0.609017 |
Target: 5'- gCUCGgGCGgggaGGGCCGUUGGggugggGGCGg -3' miRNA: 3'- -GGGCgCGU----UCCGGCAGCCauga--CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 143741 | 0.67 | 0.716172 |
Target: 5'- cUCCGCGCc--GCCG-CGGUGCaguccUGGCu -3' miRNA: 3'- -GGGCGCGuucCGGCaGCCAUG-----ACCGc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 98573 | 0.67 | 0.719981 |
Target: 5'- aCCCGCGUAgccagccucaccgauAGGCUGcUGGUGuucUUGGUGg -3' miRNA: 3'- -GGGCGCGU---------------UCCGGCaGCCAU---GACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 39207 | 0.67 | 0.725674 |
Target: 5'- -aCGCGCcuacGCCGccgCGGcGCUGGCGg -3' miRNA: 3'- ggGCGCGuuc-CGGCa--GCCaUGACCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 7758 | 0.66 | 0.806884 |
Target: 5'- cUCCGCGUc-GGCaGUCGGgcACUGaGCGa -3' miRNA: 3'- -GGGCGCGuuCCGgCAGCCa-UGAC-CGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 35790 | 0.66 | 0.806884 |
Target: 5'- -gCGCGguGGcGCCGUCGugGCgGGCGc -3' miRNA: 3'- ggGCGCguUC-CGGCAGCcaUGaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 146577 | 0.66 | 0.806036 |
Target: 5'- gCCGCGCcucAGGCgaugUGUCGGUACUcucagaacugggaGGgGg -3' miRNA: 3'- gGGCGCGu--UCCG----GCAGCCAUGA-------------CCgC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 114215 | 0.66 | 0.789657 |
Target: 5'- aCCCGCGCAAGGUUugaagCGGUACc---- -3' miRNA: 3'- -GGGCGCGUUCCGGca---GCCAUGaccgc -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 42918 | 0.66 | 0.762859 |
Target: 5'- gCCCGCGaCAcgGGGCCGUacacccagucGUACguccgGGCGc -3' miRNA: 3'- -GGGCGC-GU--UCCGGCAgc--------CAUGa----CCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 74242 | 0.67 | 0.757378 |
Target: 5'- -gCGCGCu-GGCCGcgcuccagacacggCGGUAgaGGCGg -3' miRNA: 3'- ggGCGCGuuCCGGCa-------------GCCAUgaCCGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 156694 | 0.67 | 0.744448 |
Target: 5'- gCCCGCGCGagacccAGGaCGggCGGUGCUucGCGa -3' miRNA: 3'- -GGGCGCGU------UCCgGCa-GCCAUGAc-CGC- -5' |
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24647 | 5' | -59.9 | NC_005264.1 | + | 116393 | 0.67 | 0.735102 |
Target: 5'- gCCGCGCAaaagccgcAGGCCGacgUCGaGcGCagGGCGg -3' miRNA: 3'- gGGCGCGU--------UCCGGC---AGC-CaUGa-CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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