miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24649 3' -54.7 NC_005264.1 + 132896 0.66 0.94632
Target:  5'- -uGCUGUgaGCGAagGCUGCCCUgcguuaaugGACAa -3'
miRNA:   3'- agUGGCAgaCGUU--UGACGGGGa--------CUGU- -5'
24649 3' -54.7 NC_005264.1 + 99788 0.66 0.941779
Target:  5'- uUC-UUGUUUGgGAACgcGCCCCUGGCGu -3'
miRNA:   3'- -AGuGGCAGACgUUUGa-CGGGGACUGU- -5'
24649 3' -54.7 NC_005264.1 + 73439 0.66 0.926697
Target:  5'- -uGCUGUUUcgcGCAGuCUGCCCUUGGCc -3'
miRNA:   3'- agUGGCAGA---CGUUuGACGGGGACUGu -5'
24649 3' -54.7 NC_005264.1 + 59543 0.66 0.926697
Target:  5'- aCGCgGUCU-CuGACUGCCCggGACAg -3'
miRNA:   3'- aGUGgCAGAcGuUUGACGGGgaCUGU- -5'
24649 3' -54.7 NC_005264.1 + 92806 0.67 0.92118
Target:  5'- aCGCCGUCUGagcucguuaauCAGAUcGUUCCUGACc -3'
miRNA:   3'- aGUGGCAGAC-----------GUUUGaCGGGGACUGu -5'
24649 3' -54.7 NC_005264.1 + 38418 0.67 0.92118
Target:  5'- aCGCC--CUGCug---GCCCCUGGCAa -3'
miRNA:   3'- aGUGGcaGACGuuugaCGGGGACUGU- -5'
24649 3' -54.7 NC_005264.1 + 76792 0.67 0.92118
Target:  5'- gUUACCGUCgGCGAaguuuaGCagGUUCCUGGCGg -3'
miRNA:   3'- -AGUGGCAGaCGUU------UGa-CGGGGACUGU- -5'
24649 3' -54.7 NC_005264.1 + 157445 0.67 0.92118
Target:  5'- aCGCC--CUGCug---GCCCCUGGCAa -3'
miRNA:   3'- aGUGGcaGACGuuugaCGGGGACUGU- -5'
24649 3' -54.7 NC_005264.1 + 125710 0.67 0.92118
Target:  5'- cCGCCGgc-GCcuGgUGCCCCUGugGa -3'
miRNA:   3'- aGUGGCagaCGuuUgACGGGGACugU- -5'
24649 3' -54.7 NC_005264.1 + 133706 0.67 0.915419
Target:  5'- cCGCCGcgcaCUGguG-CUGCCUCUGGCc -3'
miRNA:   3'- aGUGGCa---GACguUuGACGGGGACUGu -5'
24649 3' -54.7 NC_005264.1 + 66624 0.67 0.915419
Target:  5'- gCGCCGUCgcggcccgagGCAAGCUGCCaauacGACu -3'
miRNA:   3'- aGUGGCAGa---------CGUUUGACGGgga--CUGu -5'
24649 3' -54.7 NC_005264.1 + 51099 0.67 0.896683
Target:  5'- gUCGCCGgugCUGCGGuCUGCUCgcgccucgacgCUGGCGg -3'
miRNA:   3'- -AGUGGCa--GACGUUuGACGGG-----------GACUGU- -5'
24649 3' -54.7 NC_005264.1 + 4441 0.68 0.889961
Target:  5'- gUCAUCGUCUGag----GCCUCUGGCu -3'
miRNA:   3'- -AGUGGCAGACguuugaCGGGGACUGu -5'
24649 3' -54.7 NC_005264.1 + 123468 0.68 0.889961
Target:  5'- gUCAUCGUCUGag----GCCUCUGGCu -3'
miRNA:   3'- -AGUGGCAGACguuugaCGGGGACUGu -5'
24649 3' -54.7 NC_005264.1 + 33946 0.69 0.831652
Target:  5'- cCGCCGUCgucgaggacgagcggUgccGCAAGCUGUCCgCUGGCGa -3'
miRNA:   3'- aGUGGCAG---------------A---CGUUUGACGGG-GACUGU- -5'
24649 3' -54.7 NC_005264.1 + 52337 0.69 0.828259
Target:  5'- gUCGCUGg--GCGGGCUGCCCC--ACAa -3'
miRNA:   3'- -AGUGGCagaCGUUUGACGGGGacUGU- -5'
24649 3' -54.7 NC_005264.1 + 75402 0.7 0.783547
Target:  5'- cCACCGUCUGC--GCgGCCgCgGGCAg -3'
miRNA:   3'- aGUGGCAGACGuuUGaCGGgGaCUGU- -5'
24649 3' -54.7 NC_005264.1 + 154824 0.71 0.73536
Target:  5'- gCGCCGUCgugGCGGGC-GCCUCUGcCGg -3'
miRNA:   3'- aGUGGCAGa--CGUUUGaCGGGGACuGU- -5'
24649 3' -54.7 NC_005264.1 + 35798 0.71 0.73536
Target:  5'- gCGCCGUCgugGCGGGC-GCCUCUGcCGg -3'
miRNA:   3'- aGUGGCAGa--CGUUUGaCGGGGACuGU- -5'
24649 3' -54.7 NC_005264.1 + 109494 0.71 0.725409
Target:  5'- aCGCCGUCcuuagGCugguuGGGCUGCCCCUG-Cu -3'
miRNA:   3'- aGUGGCAGa----CG-----UUUGACGGGGACuGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.