Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 4323 | 0.72 | 0.684875 |
Target: 5'- cCACCacagcGCAGGcCUGCCCCUGGCGg -3' miRNA: 3'- aGUGGcaga-CGUUU-GACGGGGACUGU- -5' |
|||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 123350 | 0.72 | 0.684875 |
Target: 5'- cCACCacagcGCAGGcCUGCCCCUGGCGg -3' miRNA: 3'- aGUGGcaga-CGUUU-GACGGGGACUGU- -5' |
|||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 20283 | 0.72 | 0.643624 |
Target: 5'- -gACCGUCUGCGcGCUugcgGCCCCgaggGGCu -3' miRNA: 3'- agUGGCAGACGUuUGA----CGGGGa---CUGu -5' |
|||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 160198 | 0.74 | 0.550011 |
Target: 5'- -uGCCG-CUGCAGAgcgcaacCUGCCCgCUGACAc -3' miRNA: 3'- agUGGCaGACGUUU-------GACGGG-GACUGU- -5' |
|||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 70070 | 0.76 | 0.44427 |
Target: 5'- -aACCGcaUCUGCGGACUGcCCCCUGuCGg -3' miRNA: 3'- agUGGC--AGACGUUUGAC-GGGGACuGU- -5' |
|||||||
24649 | 3' | -54.7 | NC_005264.1 | + | 90682 | 1.09 | 0.003793 |
Target: 5'- gUCACCGUCUGCAAACUGCCCCUGACAc -3' miRNA: 3'- -AGUGGCAGACGUUUGACGGGGACUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home