miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 73300 0.66 0.937672
Target:  5'- cGCCGgacacugCCcGCGCCAaucaaUAGGCCGCc--- -3'
miRNA:   3'- -CGGUa------GGuCGCGGU-----AUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 83225 0.66 0.937672
Target:  5'- gGCCGUugcgcgUgGGCGUC-UAGGCCGCcgCUg -3'
miRNA:   3'- -CGGUA------GgUCGCGGuAUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 90688 0.66 0.932704
Target:  5'- --aGUCUAGCGCCuugAGcGCCaGCAUCa -3'
miRNA:   3'- cggUAGGUCGCGGua-UC-UGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 8258 0.66 0.932704
Target:  5'- gGCCAg-CGGCGCCcUGGuguCCGCcUCg -3'
miRNA:   3'- -CGGUagGUCGCGGuAUCu--GGCGuAGa -5'
24650 5' -55.2 NC_005264.1 + 68247 0.66 0.927494
Target:  5'- aGCCAUgCCcGCGCCGcGGGCgGCcugCUg -3'
miRNA:   3'- -CGGUA-GGuCGCGGUaUCUGgCGua-GA- -5'
24650 5' -55.2 NC_005264.1 + 5585 0.66 0.927494
Target:  5'- aCCAccUCCAacGCGCCGaGGGCCGCc--- -3'
miRNA:   3'- cGGU--AGGU--CGCGGUaUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 62359 0.66 0.927494
Target:  5'- cCCcUCCAGgGCCcu-GGCCGCcgCg -3'
miRNA:   3'- cGGuAGGUCgCGGuauCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 95655 0.66 0.927494
Target:  5'- cGCCgcGUCaUAGCGCUGcAGGCCGcCAUCc -3'
miRNA:   3'- -CGG--UAG-GUCGCGGUaUCUGGC-GUAGa -5'
24650 5' -55.2 NC_005264.1 + 130301 0.66 0.927494
Target:  5'- aGCCAcauccacagCCAGgGCCGaggaUGGGUCGCAUCg -3'
miRNA:   3'- -CGGUa--------GGUCgCGGU----AUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 57859 0.66 0.922042
Target:  5'- gGUCGU-CAGCGCCAgAGACgGCggCa -3'
miRNA:   3'- -CGGUAgGUCGCGGUaUCUGgCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 111064 0.66 0.922042
Target:  5'- cGCCAagUUC-GCGCCGggcGAUUGCAUCUc -3'
miRNA:   3'- -CGGU--AGGuCGCGGUau-CUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 104943 0.66 0.922042
Target:  5'- aGCCGUgCCaAGCGCCGagccucguGGCC-CAUCUa -3'
miRNA:   3'- -CGGUA-GG-UCGCGGUau------CUGGcGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 14865 0.66 0.921484
Target:  5'- gGCUugCCAGgGCCAuguacacUAGACgCGCGUCc -3'
miRNA:   3'- -CGGuaGGUCgCGGU-------AUCUG-GCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 69577 0.66 0.916348
Target:  5'- aGCCGgggCCcuGGCGCCAccUAGcCCGCuugCUg -3'
miRNA:   3'- -CGGUa--GG--UCGCGGU--AUCuGGCGua-GA- -5'
24650 5' -55.2 NC_005264.1 + 123627 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5'
24650 5' -55.2 NC_005264.1 + 4600 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5'
24650 5' -55.2 NC_005264.1 + 10922 0.66 0.916348
Target:  5'- aGCUcgUUGGCGUCAUGGAgCCGcCGUCc -3'
miRNA:   3'- -CGGuaGGUCGCGGUAUCU-GGC-GUAGa -5'
24650 5' -55.2 NC_005264.1 + 107227 0.67 0.910412
Target:  5'- uGgCAUUCGGCGCCA---GCCGCggCUu -3'
miRNA:   3'- -CgGUAGGUCGCGGUaucUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 128464 0.67 0.904865
Target:  5'- cCCGUCUuuGGCGUCGgcaaguucgcgcuuGGCCGCGUCa -3'
miRNA:   3'- cGGUAGG--UCGCGGUau------------CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 9400 0.67 0.904237
Target:  5'- cUCGUgCAGCGCCAauGACUGCGccUCa -3'
miRNA:   3'- cGGUAgGUCGCGGUauCUGGCGU--AGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.