Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24650 | 5' | -55.2 | NC_005264.1 | + | 73300 | 0.66 | 0.937672 |
Target: 5'- cGCCGgacacugCCcGCGCCAaucaaUAGGCCGCc--- -3' miRNA: 3'- -CGGUa------GGuCGCGGU-----AUCUGGCGuaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 68247 | 0.66 | 0.927494 |
Target: 5'- aGCCAUgCCcGCGCCGcGGGCgGCcugCUg -3' miRNA: 3'- -CGGUA-GGuCGCGGUaUCUGgCGua-GA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 8258 | 0.66 | 0.932704 |
Target: 5'- gGCCAg-CGGCGCCcUGGuguCCGCcUCg -3' miRNA: 3'- -CGGUagGUCGCGGuAUCu--GGCGuAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 5585 | 0.66 | 0.927494 |
Target: 5'- aCCAccUCCAacGCGCCGaGGGCCGCc--- -3' miRNA: 3'- cGGU--AGGU--CGCGGUaUCUGGCGuaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 62359 | 0.66 | 0.927494 |
Target: 5'- cCCcUCCAGgGCCcu-GGCCGCcgCg -3' miRNA: 3'- cGGuAGGUCgCGGuauCUGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 14865 | 0.66 | 0.921484 |
Target: 5'- gGCUugCCAGgGCCAuguacacUAGACgCGCGUCc -3' miRNA: 3'- -CGGuaGGUCgCGGU-------AUCUG-GCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 123627 | 0.66 | 0.916348 |
Target: 5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3' miRNA: 3'- cGGuaGGUCGCGGUauCUGgCGUAga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 69577 | 0.66 | 0.916348 |
Target: 5'- aGCCGgggCCcuGGCGCCAccUAGcCCGCuugCUg -3' miRNA: 3'- -CGGUa--GG--UCGCGGU--AUCuGGCGua-GA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 4600 | 0.66 | 0.916348 |
Target: 5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3' miRNA: 3'- cGGuaGGUCGCGGUauCUGgCGUAga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 57859 | 0.66 | 0.922042 |
Target: 5'- gGUCGU-CAGCGCCAgAGACgGCggCa -3' miRNA: 3'- -CGGUAgGUCGCGGUaUCUGgCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 83225 | 0.66 | 0.937672 |
Target: 5'- gGCCGUugcgcgUgGGCGUC-UAGGCCGCcgCUg -3' miRNA: 3'- -CGGUA------GgUCGCGGuAUCUGGCGuaGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 90688 | 0.66 | 0.932704 |
Target: 5'- --aGUCUAGCGCCuugAGcGCCaGCAUCa -3' miRNA: 3'- cggUAGGUCGCGGua-UC-UGG-CGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 95655 | 0.66 | 0.927494 |
Target: 5'- cGCCgcGUCaUAGCGCUGcAGGCCGcCAUCc -3' miRNA: 3'- -CGG--UAG-GUCGCGGUaUCUGGC-GUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 130301 | 0.66 | 0.927494 |
Target: 5'- aGCCAcauccacagCCAGgGCCGaggaUGGGUCGCAUCg -3' miRNA: 3'- -CGGUa--------GGUCgCGGU----AUCUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 111064 | 0.66 | 0.922042 |
Target: 5'- cGCCAagUUC-GCGCCGggcGAUUGCAUCUc -3' miRNA: 3'- -CGGU--AGGuCGCGGUau-CUGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 104943 | 0.66 | 0.922042 |
Target: 5'- aGCCGUgCCaAGCGCCGagccucguGGCC-CAUCUa -3' miRNA: 3'- -CGGUA-GG-UCGCGGUau------CUGGcGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 10922 | 0.66 | 0.916348 |
Target: 5'- aGCUcgUUGGCGUCAUGGAgCCGcCGUCc -3' miRNA: 3'- -CGGuaGGUCGCGGUAUCU-GGC-GUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 146278 | 0.67 | 0.8843 |
Target: 5'- cGCCGccCCGGCGCCGcccACCGCG-CUg -3' miRNA: 3'- -CGGUa-GGUCGCGGUaucUGGCGUaGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 36976 | 0.67 | 0.891178 |
Target: 5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3' miRNA: 3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 32905 | 0.67 | 0.897825 |
Target: 5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3' miRNA: 3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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