Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24650 | 5' | -55.2 | NC_005264.1 | + | 122042 | 0.68 | 0.86987 |
Target: 5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3' miRNA: 3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 9815 | 0.68 | 0.846617 |
Target: 5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3' miRNA: 3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 71408 | 0.68 | 0.846617 |
Target: 5'- cGCC-UCUAGgGCCAUGGACCa----- -3' miRNA: 3'- -CGGuAGGUCgCGGUAUCUGGcguaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 107670 | 0.68 | 0.846617 |
Target: 5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3' miRNA: 3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 30366 | 0.68 | 0.854574 |
Target: 5'- aGCCccUUCGGCGCC----GCCGCGUCg -3' miRNA: 3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 85557 | 0.68 | 0.86763 |
Target: 5'- uGCCGcgcacccaauucguUCCAG-GCCcaAGGCCGUAUCg -3' miRNA: 3'- -CGGU--------------AGGUCgCGGuaUCUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 35443 | 0.68 | 0.838462 |
Target: 5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3' miRNA: 3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 3015 | 0.68 | 0.86987 |
Target: 5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3' miRNA: 3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 128664 | 0.69 | 0.830117 |
Target: 5'- uGCUGUCCAGCaGCUGU-GACUGCAg-- -3' miRNA: 3'- -CGGUAGGUCG-CGGUAuCUGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 86502 | 0.69 | 0.794992 |
Target: 5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3' miRNA: 3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 139224 | 0.69 | 0.785816 |
Target: 5'- aGCCAaucgCCAGCGagcaaaaGUAGACCGCGa-- -3' miRNA: 3'- -CGGUa---GGUCGCgg-----UAUCUGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 126095 | 0.69 | 0.82159 |
Target: 5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3' miRNA: 3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 162591 | 0.69 | 0.785816 |
Target: 5'- uGCCgcGUCCAGCGCC----GCCGCAc-- -3' miRNA: 3'- -CGG--UAGGUCGCGGuaucUGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 7068 | 0.69 | 0.82159 |
Target: 5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3' miRNA: 3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 75195 | 0.7 | 0.73802 |
Target: 5'- cGCCAggUCCcGCGCCccacgcGGCUGCAUCg -3' miRNA: 3'- -CGGU--AGGuCGCGGuau---CUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 104957 | 0.7 | 0.747804 |
Target: 5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3' miRNA: 3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 2990 | 0.7 | 0.757485 |
Target: 5'- uCCAUCgAGCGCCGacUGGGCCGgCGgcUCg -3' miRNA: 3'- cGGUAGgUCGCGGU--AUCUGGC-GU--AGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 21761 | 0.7 | 0.776501 |
Target: 5'- gGCCGUCUugAGCGCCGUAacuuuGGCgGCAgUCg -3' miRNA: 3'- -CGGUAGG--UCGCGGUAU-----CUGgCGU-AGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 103115 | 0.7 | 0.767054 |
Target: 5'- aGCCAauacgUCCGGCGCgGUAG-CCGCcggCg -3' miRNA: 3'- -CGGU-----AGGUCGCGgUAUCuGGCGua-Ga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 101020 | 0.7 | 0.767054 |
Target: 5'- gGUCGUCCucauaAGCGuCCAcUGGcACCGCGUCg -3' miRNA: 3'- -CGGUAGG-----UCGC-GGU-AUC-UGGCGUAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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