miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 92324 1.09 0.003147
Target:  5'- cGCCAUCCAGCGCCAUAGACCGCAUCUu -3'
miRNA:   3'- -CGGUAGGUCGCGGUAUCUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 88539 0.74 0.514784
Target:  5'- gGCCAUgCCGcGCGCC--AGACCGCcgCUa -3'
miRNA:   3'- -CGGUA-GGU-CGCGGuaUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 108869 0.74 0.528621
Target:  5'- cGCCGuUCCGGCGCCAauaagugacgccaugUGGugCGCgcgGUCUa -3'
miRNA:   3'- -CGGU-AGGUCGCGGU---------------AUCugGCG---UAGA- -5'
24650 5' -55.2 NC_005264.1 + 35200 0.74 0.544599
Target:  5'- cCCGUCUAGCGCCGgAGACUGUugcucAUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGUaUCUGGCG-----UAGA- -5'
24650 5' -55.2 NC_005264.1 + 123766 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 4740 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 88067 0.73 0.605673
Target:  5'- cGCCAUCUuacauguauuGCGCCAagcAGugCGCGUCg -3'
miRNA:   3'- -CGGUAGGu---------CGCGGUa--UCugGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 44034 0.73 0.615963
Target:  5'- aGCCGUUgGGCGUag-AGGCCGCuAUCUg -3'
miRNA:   3'- -CGGUAGgUCGCGguaUCUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 20155 0.72 0.636572
Target:  5'- cGCCG-CCGGCGCCcaAGAUCGCggCa -3'
miRNA:   3'- -CGGUaGGUCGCGGuaUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 85049 0.72 0.646876
Target:  5'- uGCCGUCU-GCGCCGcggugcgucucUGcGGCCGCGUCg -3'
miRNA:   3'- -CGGUAGGuCGCGGU-----------AU-CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 83116 0.72 0.667439
Target:  5'- cGCCGaCgGGCGCCA-AGGCCGCGg-- -3'
miRNA:   3'- -CGGUaGgUCGCGGUaUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 112247 0.72 0.667439
Target:  5'- -aCGUCCAGCGCC--GGGCUGC-UCa -3'
miRNA:   3'- cgGUAGGUCGCGGuaUCUGGCGuAGa -5'
24650 5' -55.2 NC_005264.1 + 155784 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 36758 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 3454 0.71 0.708145
Target:  5'- cGCCGcCCguGGCGCCcgGuGCCGCAUCc -3'
miRNA:   3'- -CGGUaGG--UCGCGGuaUcUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 133810 0.71 0.718181
Target:  5'- uCCAUCCAguauuuccGCGCCAUGGACcCGaCAUa- -3'
miRNA:   3'- cGGUAGGU--------CGCGGUAUCUG-GC-GUAga -5'
24650 5' -55.2 NC_005264.1 + 111722 0.71 0.728143
Target:  5'- uGCCcgCCAGCGUCGaggcgcgagcAGACCGCAg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUa---------UCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 134972 0.71 0.728143
Target:  5'- aGCCAUCCGGUGCgAccGACuCGCAa-- -3'
miRNA:   3'- -CGGUAGGUCGCGgUauCUG-GCGUaga -5'
24650 5' -55.2 NC_005264.1 + 75195 0.7 0.73802
Target:  5'- cGCCAggUCCcGCGCCccacgcGGCUGCAUCg -3'
miRNA:   3'- -CGGU--AGGuCGCGGuau---CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 104957 0.7 0.747804
Target:  5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3'
miRNA:   3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.