Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24650 | 5' | -55.2 | NC_005264.1 | + | 9400 | 0.67 | 0.904237 |
Target: 5'- cUCGUgCAGCGCCAauGACUGCGccUCa -3' miRNA: 3'- cGGUAgGUCGCGGUauCUGGCGU--AGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 154405 | 0.67 | 0.897825 |
Target: 5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3' miRNA: 3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 35378 | 0.67 | 0.897825 |
Target: 5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3' miRNA: 3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 151931 | 0.67 | 0.897825 |
Target: 5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3' miRNA: 3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 7931 | 0.67 | 0.897825 |
Target: 5'- cGCgCGUCCAcGCGUCGUccacGGCCGCggcGUCUu -3' miRNA: 3'- -CG-GUAGGU-CGCGGUAu---CUGGCG---UAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 32905 | 0.67 | 0.897825 |
Target: 5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3' miRNA: 3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 36976 | 0.67 | 0.891178 |
Target: 5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3' miRNA: 3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 156003 | 0.67 | 0.891178 |
Target: 5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3' miRNA: 3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 122602 | 0.67 | 0.8843 |
Target: 5'- cGCaCGUCCA-CGacaGUAGACUGCGUCg -3' miRNA: 3'- -CG-GUAGGUcGCgg-UAUCUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 31526 | 0.67 | 0.8843 |
Target: 5'- cCCAUaUCGGCGUUGUAGgcuucuACCGCAUCa -3' miRNA: 3'- cGGUA-GGUCGCGGUAUC------UGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 87119 | 0.67 | 0.8843 |
Target: 5'- gGCC-UCCGGCGCCcgcGGGgCGCAccagUCUu -3' miRNA: 3'- -CGGuAGGUCGCGGua-UCUgGCGU----AGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 146278 | 0.67 | 0.8843 |
Target: 5'- cGCCGccCCGGCGCCGcccACCGCG-CUg -3' miRNA: 3'- -CGGUa-GGUCGCGGUaucUGGCGUaGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 34982 | 0.67 | 0.877196 |
Target: 5'- cCCAUUCGcGCGCCGgguucUAGACCGCc--- -3' miRNA: 3'- cGGUAGGU-CGCGGU-----AUCUGGCGuaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 3015 | 0.68 | 0.86987 |
Target: 5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3' miRNA: 3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 122042 | 0.68 | 0.86987 |
Target: 5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3' miRNA: 3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 85557 | 0.68 | 0.86763 |
Target: 5'- uGCCGcgcacccaauucguUCCAG-GCCcaAGGCCGUAUCg -3' miRNA: 3'- -CGGU--------------AGGUCgCGGuaUCUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 93178 | 0.68 | 0.862327 |
Target: 5'- gGCC--CCAGCGCCGcgugcccgaccUAGAaaGCGUCg -3' miRNA: 3'- -CGGuaGGUCGCGGU-----------AUCUggCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 30366 | 0.68 | 0.854574 |
Target: 5'- aGCCccUUCGGCGCC----GCCGCGUCg -3' miRNA: 3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 149393 | 0.68 | 0.854574 |
Target: 5'- aGCCccUUCGGCGCC----GCCGCGUCg -3' miRNA: 3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 107670 | 0.68 | 0.846617 |
Target: 5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3' miRNA: 3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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