miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 9861 0.68 0.846617
Target:  5'- cCUcgCCcGCGCCGgAGACCGCAa-- -3'
miRNA:   3'- cGGuaGGuCGCGGUaUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 9815 0.68 0.846617
Target:  5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3'
miRNA:   3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 71408 0.68 0.846617
Target:  5'- cGCC-UCUAGgGCCAUGGACCa----- -3'
miRNA:   3'- -CGGuAGGUCgCGGUAUCUGGcguaga -5'
24650 5' -55.2 NC_005264.1 + 107670 0.68 0.846617
Target:  5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3'
miRNA:   3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5'
24650 5' -55.2 NC_005264.1 + 35443 0.68 0.838462
Target:  5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3'
miRNA:   3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 99110 0.68 0.838462
Target:  5'- aGCCGUCUGGUGgCGUGGAUagaCGCcUCUg -3'
miRNA:   3'- -CGGUAGGUCGCgGUAUCUG---GCGuAGA- -5'
24650 5' -55.2 NC_005264.1 + 33335 0.68 0.838462
Target:  5'- cGCC-UCCGGCGCCGccaaacccUGcGCCGCcgCa -3'
miRNA:   3'- -CGGuAGGUCGCGGU--------AUcUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 154470 0.68 0.838462
Target:  5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3'
miRNA:   3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 128664 0.69 0.830117
Target:  5'- uGCUGUCCAGCaGCUGU-GACUGCAg-- -3'
miRNA:   3'- -CGGUAGGUCG-CGGUAuCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 126095 0.69 0.82159
Target:  5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 7068 0.69 0.82159
Target:  5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 86502 0.69 0.794992
Target:  5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3'
miRNA:   3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5'
24650 5' -55.2 NC_005264.1 + 139224 0.69 0.785816
Target:  5'- aGCCAaucgCCAGCGagcaaaaGUAGACCGCGa-- -3'
miRNA:   3'- -CGGUa---GGUCGCgg-----UAUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 162591 0.69 0.785816
Target:  5'- uGCCgcGUCCAGCGCC----GCCGCAc-- -3'
miRNA:   3'- -CGG--UAGGUCGCGGuaucUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 21761 0.7 0.776501
Target:  5'- gGCCGUCUugAGCGCCGUAacuuuGGCgGCAgUCg -3'
miRNA:   3'- -CGGUAGG--UCGCGGUAU-----CUGgCGU-AGa -5'
24650 5' -55.2 NC_005264.1 + 101020 0.7 0.767054
Target:  5'- gGUCGUCCucauaAGCGuCCAcUGGcACCGCGUCg -3'
miRNA:   3'- -CGGUAGG-----UCGC-GGU-AUC-UGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 103115 0.7 0.767054
Target:  5'- aGCCAauacgUCCGGCGCgGUAG-CCGCcggCg -3'
miRNA:   3'- -CGGU-----AGGUCGCGgUAUCuGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 2990 0.7 0.757485
Target:  5'- uCCAUCgAGCGCCGacUGGGCCGgCGgcUCg -3'
miRNA:   3'- cGGUAGgUCGCGGU--AUCUGGC-GU--AGa -5'
24650 5' -55.2 NC_005264.1 + 104957 0.7 0.747804
Target:  5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3'
miRNA:   3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5'
24650 5' -55.2 NC_005264.1 + 75195 0.7 0.73802
Target:  5'- cGCCAggUCCcGCGCCccacgcGGCUGCAUCg -3'
miRNA:   3'- -CGGU--AGGuCGCGGuau---CUGGCGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.