miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 2990 0.7 0.757485
Target:  5'- uCCAUCgAGCGCCGacUGGGCCGgCGgcUCg -3'
miRNA:   3'- cGGUAGgUCGCGGU--AUCUGGC-GU--AGa -5'
24650 5' -55.2 NC_005264.1 + 3015 0.68 0.86987
Target:  5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 3454 0.71 0.708145
Target:  5'- cGCCGcCCguGGCGCCcgGuGCCGCAUCc -3'
miRNA:   3'- -CGGUaGG--UCGCGGuaUcUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 4600 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5'
24650 5' -55.2 NC_005264.1 + 4740 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 5585 0.66 0.927494
Target:  5'- aCCAccUCCAacGCGCCGaGGGCCGCc--- -3'
miRNA:   3'- cGGU--AGGU--CGCGGUaUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 7068 0.69 0.82159
Target:  5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 7931 0.67 0.897825
Target:  5'- cGCgCGUCCAcGCGUCGUccacGGCCGCggcGUCUu -3'
miRNA:   3'- -CG-GUAGGU-CGCGGUAu---CUGGCG---UAGA- -5'
24650 5' -55.2 NC_005264.1 + 8258 0.66 0.932704
Target:  5'- gGCCAg-CGGCGCCcUGGuguCCGCcUCg -3'
miRNA:   3'- -CGGUagGUCGCGGuAUCu--GGCGuAGa -5'
24650 5' -55.2 NC_005264.1 + 9400 0.67 0.904237
Target:  5'- cUCGUgCAGCGCCAauGACUGCGccUCa -3'
miRNA:   3'- cGGUAgGUCGCGGUauCUGGCGU--AGa -5'
24650 5' -55.2 NC_005264.1 + 9815 0.68 0.846617
Target:  5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3'
miRNA:   3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 9861 0.68 0.846617
Target:  5'- cCUcgCCcGCGCCGgAGACCGCAa-- -3'
miRNA:   3'- cGGuaGGuCGCGGUaUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 10922 0.66 0.916348
Target:  5'- aGCUcgUUGGCGUCAUGGAgCCGcCGUCc -3'
miRNA:   3'- -CGGuaGGUCGCGGUAUCU-GGC-GUAGa -5'
24650 5' -55.2 NC_005264.1 + 14865 0.66 0.921484
Target:  5'- gGCUugCCAGgGCCAuguacacUAGACgCGCGUCc -3'
miRNA:   3'- -CGGuaGGUCgCGGU-------AUCUG-GCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 20155 0.72 0.636572
Target:  5'- cGCCG-CCGGCGCCcaAGAUCGCggCa -3'
miRNA:   3'- -CGGUaGGUCGCGGuaUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 21761 0.7 0.776501
Target:  5'- gGCCGUCUugAGCGCCGUAacuuuGGCgGCAgUCg -3'
miRNA:   3'- -CGGUAGG--UCGCGGUAU-----CUGgCGU-AGa -5'
24650 5' -55.2 NC_005264.1 + 30366 0.68 0.854574
Target:  5'- aGCCccUUCGGCGCC----GCCGCGUCg -3'
miRNA:   3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 31526 0.67 0.8843
Target:  5'- cCCAUaUCGGCGUUGUAGgcuucuACCGCAUCa -3'
miRNA:   3'- cGGUA-GGUCGCGGUAUC------UGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 32905 0.67 0.897825
Target:  5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3'
miRNA:   3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5'
24650 5' -55.2 NC_005264.1 + 33335 0.68 0.838462
Target:  5'- cGCC-UCCGGCGCCGccaaacccUGcGCCGCcgCa -3'
miRNA:   3'- -CGGuAGGUCGCGGU--------AUcUGGCGuaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.