miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 34982 0.67 0.877196
Target:  5'- cCCAUUCGcGCGCCGgguucUAGACCGCc--- -3'
miRNA:   3'- cGGUAGGU-CGCGGU-----AUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 35200 0.74 0.544599
Target:  5'- cCCGUCUAGCGCCGgAGACUGUugcucAUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGUaUCUGGCG-----UAGA- -5'
24650 5' -55.2 NC_005264.1 + 35378 0.67 0.897825
Target:  5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3'
miRNA:   3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 35443 0.68 0.838462
Target:  5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3'
miRNA:   3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 36758 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 36976 0.67 0.891178
Target:  5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3'
miRNA:   3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 44034 0.73 0.615963
Target:  5'- aGCCGUUgGGCGUag-AGGCCGCuAUCUg -3'
miRNA:   3'- -CGGUAGgUCGCGguaUCUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 57859 0.66 0.922042
Target:  5'- gGUCGU-CAGCGCCAgAGACgGCggCa -3'
miRNA:   3'- -CGGUAgGUCGCGGUaUCUGgCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 62359 0.66 0.927494
Target:  5'- cCCcUCCAGgGCCcu-GGCCGCcgCg -3'
miRNA:   3'- cGGuAGGUCgCGGuauCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 68247 0.66 0.927494
Target:  5'- aGCCAUgCCcGCGCCGcGGGCgGCcugCUg -3'
miRNA:   3'- -CGGUA-GGuCGCGGUaUCUGgCGua-GA- -5'
24650 5' -55.2 NC_005264.1 + 69577 0.66 0.916348
Target:  5'- aGCCGgggCCcuGGCGCCAccUAGcCCGCuugCUg -3'
miRNA:   3'- -CGGUa--GG--UCGCGGU--AUCuGGCGua-GA- -5'
24650 5' -55.2 NC_005264.1 + 71408 0.68 0.846617
Target:  5'- cGCC-UCUAGgGCCAUGGACCa----- -3'
miRNA:   3'- -CGGuAGGUCgCGGUAUCUGGcguaga -5'
24650 5' -55.2 NC_005264.1 + 73300 0.66 0.937672
Target:  5'- cGCCGgacacugCCcGCGCCAaucaaUAGGCCGCc--- -3'
miRNA:   3'- -CGGUa------GGuCGCGGU-----AUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 75195 0.7 0.73802
Target:  5'- cGCCAggUCCcGCGCCccacgcGGCUGCAUCg -3'
miRNA:   3'- -CGGU--AGGuCGCGGuau---CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 83116 0.72 0.667439
Target:  5'- cGCCGaCgGGCGCCA-AGGCCGCGg-- -3'
miRNA:   3'- -CGGUaGgUCGCGGUaUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 83225 0.66 0.937672
Target:  5'- gGCCGUugcgcgUgGGCGUC-UAGGCCGCcgCUg -3'
miRNA:   3'- -CGGUA------GgUCGCGGuAUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 85049 0.72 0.646876
Target:  5'- uGCCGUCU-GCGCCGcggugcgucucUGcGGCCGCGUCg -3'
miRNA:   3'- -CGGUAGGuCGCGGU-----------AU-CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 85557 0.68 0.86763
Target:  5'- uGCCGcgcacccaauucguUCCAG-GCCcaAGGCCGUAUCg -3'
miRNA:   3'- -CGGU--------------AGGUCgCGGuaUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 86502 0.69 0.794992
Target:  5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3'
miRNA:   3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5'
24650 5' -55.2 NC_005264.1 + 87119 0.67 0.8843
Target:  5'- gGCC-UCCGGCGCCcgcGGGgCGCAccagUCUu -3'
miRNA:   3'- -CGGuAGGUCGCGGua-UCUgGCGU----AGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.