miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 162591 0.69 0.785816
Target:  5'- uGCCgcGUCCAGCGCC----GCCGCAc-- -3'
miRNA:   3'- -CGG--UAGGUCGCGGuaucUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 156003 0.67 0.891178
Target:  5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3'
miRNA:   3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 155784 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 154470 0.68 0.838462
Target:  5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3'
miRNA:   3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 154405 0.67 0.897825
Target:  5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3'
miRNA:   3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 151931 0.67 0.897825
Target:  5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3'
miRNA:   3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5'
24650 5' -55.2 NC_005264.1 + 149393 0.68 0.854574
Target:  5'- aGCCccUUCGGCGCC----GCCGCGUCg -3'
miRNA:   3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 146278 0.67 0.8843
Target:  5'- cGCCGccCCGGCGCCGcccACCGCG-CUg -3'
miRNA:   3'- -CGGUa-GGUCGCGGUaucUGGCGUaGA- -5'
24650 5' -55.2 NC_005264.1 + 139224 0.69 0.785816
Target:  5'- aGCCAaucgCCAGCGagcaaaaGUAGACCGCGa-- -3'
miRNA:   3'- -CGGUa---GGUCGCgg-----UAUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 134972 0.71 0.728143
Target:  5'- aGCCAUCCGGUGCgAccGACuCGCAa-- -3'
miRNA:   3'- -CGGUAGGUCGCGgUauCUG-GCGUaga -5'
24650 5' -55.2 NC_005264.1 + 133810 0.71 0.718181
Target:  5'- uCCAUCCAguauuuccGCGCCAUGGACcCGaCAUa- -3'
miRNA:   3'- cGGUAGGU--------CGCGGUAUCUG-GC-GUAga -5'
24650 5' -55.2 NC_005264.1 + 130301 0.66 0.927494
Target:  5'- aGCCAcauccacagCCAGgGCCGaggaUGGGUCGCAUCg -3'
miRNA:   3'- -CGGUa--------GGUCgCGGU----AUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 128841 0.68 0.846617
Target:  5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3'
miRNA:   3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 128664 0.69 0.830117
Target:  5'- uGCUGUCCAGCaGCUGU-GACUGCAg-- -3'
miRNA:   3'- -CGGUAGGUCG-CGGUAuCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 128464 0.67 0.904865
Target:  5'- cCCGUCUuuGGCGUCGgcaaguucgcgcuuGGCCGCGUCa -3'
miRNA:   3'- cGGUAGG--UCGCGGUau------------CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 126095 0.69 0.82159
Target:  5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 123766 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 123627 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5'
24650 5' -55.2 NC_005264.1 + 122602 0.67 0.8843
Target:  5'- cGCaCGUCCA-CGacaGUAGACUGCGUCg -3'
miRNA:   3'- -CG-GUAGGUcGCgg-UAUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 122042 0.68 0.86987
Target:  5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.