miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 117068 0.67 0.904237
Target:  5'- aGCCGcUCCGGCGCCc---AUCGCuGUCUg -3'
miRNA:   3'- -CGGU-AGGUCGCGGuaucUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 112247 0.72 0.667439
Target:  5'- -aCGUCCAGCGCC--GGGCUGC-UCa -3'
miRNA:   3'- cgGUAGGUCGCGGuaUCUGGCGuAGa -5'
24650 5' -55.2 NC_005264.1 + 111722 0.71 0.728143
Target:  5'- uGCCcgCCAGCGUCGaggcgcgagcAGACCGCAg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUa---------UCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 111064 0.66 0.922042
Target:  5'- cGCCAagUUC-GCGCCGggcGAUUGCAUCUc -3'
miRNA:   3'- -CGGU--AGGuCGCGGUau-CUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 108869 0.74 0.528621
Target:  5'- cGCCGuUCCGGCGCCAauaagugacgccaugUGGugCGCgcgGUCUa -3'
miRNA:   3'- -CGGU-AGGUCGCGGU---------------AUCugGCG---UAGA- -5'
24650 5' -55.2 NC_005264.1 + 107670 0.68 0.846617
Target:  5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3'
miRNA:   3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5'
24650 5' -55.2 NC_005264.1 + 107227 0.67 0.910412
Target:  5'- uGgCAUUCGGCGCCA---GCCGCggCUu -3'
miRNA:   3'- -CgGUAGGUCGCGGUaucUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 104957 0.7 0.747804
Target:  5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3'
miRNA:   3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5'
24650 5' -55.2 NC_005264.1 + 104943 0.66 0.922042
Target:  5'- aGCCGUgCCaAGCGCCGagccucguGGCC-CAUCUa -3'
miRNA:   3'- -CGGUA-GG-UCGCGGUau------CUGGcGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 103115 0.7 0.767054
Target:  5'- aGCCAauacgUCCGGCGCgGUAG-CCGCcggCg -3'
miRNA:   3'- -CGGU-----AGGUCGCGgUAUCuGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 101020 0.7 0.767054
Target:  5'- gGUCGUCCucauaAGCGuCCAcUGGcACCGCGUCg -3'
miRNA:   3'- -CGGUAGG-----UCGC-GGU-AUC-UGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 99110 0.68 0.838462
Target:  5'- aGCCGUCUGGUGgCGUGGAUagaCGCcUCUg -3'
miRNA:   3'- -CGGUAGGUCGCgGUAUCUG---GCGuAGA- -5'
24650 5' -55.2 NC_005264.1 + 95655 0.66 0.927494
Target:  5'- cGCCgcGUCaUAGCGCUGcAGGCCGcCAUCc -3'
miRNA:   3'- -CGG--UAG-GUCGCGGUaUCUGGC-GUAGa -5'
24650 5' -55.2 NC_005264.1 + 93178 0.68 0.862327
Target:  5'- gGCC--CCAGCGCCGcgugcccgaccUAGAaaGCGUCg -3'
miRNA:   3'- -CGGuaGGUCGCGGU-----------AUCUggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 92324 1.09 0.003147
Target:  5'- cGCCAUCCAGCGCCAUAGACCGCAUCUu -3'
miRNA:   3'- -CGGUAGGUCGCGGUAUCUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 90688 0.66 0.932704
Target:  5'- --aGUCUAGCGCCuugAGcGCCaGCAUCa -3'
miRNA:   3'- cggUAGGUCGCGGua-UC-UGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 88539 0.74 0.514784
Target:  5'- gGCCAUgCCGcGCGCC--AGACCGCcgCUa -3'
miRNA:   3'- -CGGUA-GGU-CGCGGuaUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 88067 0.73 0.605673
Target:  5'- cGCCAUCUuacauguauuGCGCCAagcAGugCGCGUCg -3'
miRNA:   3'- -CGGUAGGu---------CGCGGUa--UCugGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 87119 0.67 0.8843
Target:  5'- gGCC-UCCGGCGCCcgcGGGgCGCAccagUCUu -3'
miRNA:   3'- -CGGuAGGUCGCGGua-UCUgGCGU----AGA- -5'
24650 5' -55.2 NC_005264.1 + 86502 0.69 0.794992
Target:  5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3'
miRNA:   3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.