miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 92324 1.09 0.003147
Target:  5'- cGCCAUCCAGCGCCAUAGACCGCAUCUu -3'
miRNA:   3'- -CGGUAGGUCGCGGUAUCUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 99110 0.68 0.838462
Target:  5'- aGCCGUCUGGUGgCGUGGAUagaCGCcUCUg -3'
miRNA:   3'- -CGGUAGGUCGCgGUAUCUG---GCGuAGA- -5'
24650 5' -55.2 NC_005264.1 + 128841 0.68 0.846617
Target:  5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3'
miRNA:   3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 8258 0.66 0.932704
Target:  5'- gGCCAg-CGGCGCCcUGGuguCCGCcUCg -3'
miRNA:   3'- -CGGUagGUCGCGGuAUCu--GGCGuAGa -5'
24650 5' -55.2 NC_005264.1 + 88067 0.73 0.605673
Target:  5'- cGCCAUCUuacauguauuGCGCCAagcAGugCGCGUCg -3'
miRNA:   3'- -CGGUAGGu---------CGCGGUa--UCugGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 44034 0.73 0.615963
Target:  5'- aGCCGUUgGGCGUag-AGGCCGCuAUCUg -3'
miRNA:   3'- -CGGUAGgUCGCGguaUCUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 3454 0.71 0.708145
Target:  5'- cGCCGcCCguGGCGCCcgGuGCCGCAUCc -3'
miRNA:   3'- -CGGUaGG--UCGCGGuaUcUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 134972 0.71 0.728143
Target:  5'- aGCCAUCCGGUGCgAccGACuCGCAa-- -3'
miRNA:   3'- -CGGUAGGUCGCGgUauCUG-GCGUaga -5'
24650 5' -55.2 NC_005264.1 + 2990 0.7 0.757485
Target:  5'- uCCAUCgAGCGCCGacUGGGCCGgCGgcUCg -3'
miRNA:   3'- cGGUAGgUCGCGGU--AUCUGGC-GU--AGa -5'
24650 5' -55.2 NC_005264.1 + 33335 0.68 0.838462
Target:  5'- cGCC-UCCGGCGCCGccaaacccUGcGCCGCcgCa -3'
miRNA:   3'- -CGGuAGGUCGCGGU--------AUcUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 139224 0.69 0.785816
Target:  5'- aGCCAaucgCCAGCGagcaaaaGUAGACCGCGa-- -3'
miRNA:   3'- -CGGUa---GGUCGCgg-----UAUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 104957 0.7 0.747804
Target:  5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3'
miRNA:   3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5'
24650 5' -55.2 NC_005264.1 + 88539 0.74 0.514784
Target:  5'- gGCCAUgCCGcGCGCC--AGACCGCcgCUa -3'
miRNA:   3'- -CGGUA-GGU-CGCGGuaUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 86502 0.69 0.794992
Target:  5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3'
miRNA:   3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5'
24650 5' -55.2 NC_005264.1 + 35200 0.74 0.544599
Target:  5'- cCCGUCUAGCGCCGgAGACUGUugcucAUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGUaUCUGGCG-----UAGA- -5'
24650 5' -55.2 NC_005264.1 + 75195 0.7 0.73802
Target:  5'- cGCCAggUCCcGCGCCccacgcGGCUGCAUCg -3'
miRNA:   3'- -CGGU--AGGuCGCGGuau---CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 126095 0.69 0.82159
Target:  5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3'
miRNA:   3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 154470 0.68 0.838462
Target:  5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3'
miRNA:   3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 123766 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 155784 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.