miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 149393 0.68 0.854574
Target:  5'- aGCCccUUCGGCGCC----GCCGCGUCg -3'
miRNA:   3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 155784 0.71 0.698044
Target:  5'- cGCCggCCGGCGCCGUc-GCCGCuugCg -3'
miRNA:   3'- -CGGuaGGUCGCGGUAucUGGCGua-Ga -5'
24650 5' -55.2 NC_005264.1 + 123627 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5'
24650 5' -55.2 NC_005264.1 + 151931 0.67 0.897825
Target:  5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3'
miRNA:   3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5'
24650 5' -55.2 NC_005264.1 + 128841 0.68 0.846617
Target:  5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3'
miRNA:   3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 44034 0.73 0.615963
Target:  5'- aGCCGUUgGGCGUag-AGGCCGCuAUCUg -3'
miRNA:   3'- -CGGUAGgUCGCGguaUCUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 156003 0.67 0.891178
Target:  5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3'
miRNA:   3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 88067 0.73 0.605673
Target:  5'- cGCCAUCUuacauguauuGCGCCAagcAGugCGCGUCg -3'
miRNA:   3'- -CGGUAGGu---------CGCGGUa--UCugGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 123766 0.73 0.564783
Target:  5'- cGCCGagCCGGCGUCcggggGUGGACCGCcgCg -3'
miRNA:   3'- -CGGUa-GGUCGCGG-----UAUCUGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 139224 0.69 0.785816
Target:  5'- aGCCAaucgCCAGCGagcaaaaGUAGACCGCGa-- -3'
miRNA:   3'- -CGGUa---GGUCGCgg-----UAUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 9861 0.68 0.846617
Target:  5'- cCUcgCCcGCGCCGgAGACCGCAa-- -3'
miRNA:   3'- cGGuaGGuCGCGGUaUCUGGCGUaga -5'
24650 5' -55.2 NC_005264.1 + 122042 0.68 0.86987
Target:  5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 99110 0.68 0.838462
Target:  5'- aGCCGUCUGGUGgCGUGGAUagaCGCcUCUg -3'
miRNA:   3'- -CGGUAGGUCGCgGUAUCUG---GCGuAGA- -5'
24650 5' -55.2 NC_005264.1 + 86502 0.69 0.794992
Target:  5'- cGCCcUCCAGCGcCCAUGGACUuuacuauacaGCGa-- -3'
miRNA:   3'- -CGGuAGGUCGC-GGUAUCUGG----------CGUaga -5'
24650 5' -55.2 NC_005264.1 + 104957 0.7 0.747804
Target:  5'- uUCAUCC-GCGCCAUGGccgccgguGCCGcCGUCUc -3'
miRNA:   3'- cGGUAGGuCGCGGUAUC--------UGGC-GUAGA- -5'
24650 5' -55.2 NC_005264.1 + 3454 0.71 0.708145
Target:  5'- cGCCGcCCguGGCGCCcgGuGCCGCAUCc -3'
miRNA:   3'- -CGGUaGG--UCGCGGuaUcUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 5585 0.66 0.927494
Target:  5'- aCCAccUCCAacGCGCCGaGGGCCGCc--- -3'
miRNA:   3'- cGGU--AGGU--CGCGGUaUCUGGCGuaga -5'
24650 5' -55.2 NC_005264.1 + 14865 0.66 0.921484
Target:  5'- gGCUugCCAGgGCCAuguacacUAGACgCGCGUCc -3'
miRNA:   3'- -CGGuaGGUCgCGGU-------AUCUG-GCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 117068 0.67 0.904237
Target:  5'- aGCCGcUCCGGCGCCc---AUCGCuGUCUg -3'
miRNA:   3'- -CGGU-AGGUCGCGGuaucUGGCG-UAGA- -5'
24650 5' -55.2 NC_005264.1 + 7931 0.67 0.897825
Target:  5'- cGCgCGUCCAcGCGUCGUccacGGCCGCggcGUCUu -3'
miRNA:   3'- -CG-GUAGGU-CGCGGUAu---CUGGCG---UAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.