Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24650 | 5' | -55.2 | NC_005264.1 | + | 128464 | 0.67 | 0.904865 |
Target: 5'- cCCGUCUuuGGCGUCGgcaaguucgcgcuuGGCCGCGUCa -3' miRNA: 3'- cGGUAGG--UCGCGGUau------------CUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 90688 | 0.66 | 0.932704 |
Target: 5'- --aGUCUAGCGCCuugAGcGCCaGCAUCa -3' miRNA: 3'- cggUAGGUCGCGGua-UC-UGG-CGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 104943 | 0.66 | 0.922042 |
Target: 5'- aGCCGUgCCaAGCGCCGagccucguGGCC-CAUCUa -3' miRNA: 3'- -CGGUA-GG-UCGCGGUau------CUGGcGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 69577 | 0.66 | 0.916348 |
Target: 5'- aGCCGgggCCcuGGCGCCAccUAGcCCGCuugCUg -3' miRNA: 3'- -CGGUa--GG--UCGCGGU--AUCuGGCGua-GA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 111064 | 0.66 | 0.922042 |
Target: 5'- cGCCAagUUC-GCGCCGggcGAUUGCAUCUc -3' miRNA: 3'- -CGGU--AGGuCGCGGUau-CUGGCGUAGA- -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 133810 | 0.71 | 0.718181 |
Target: 5'- uCCAUCCAguauuuccGCGCCAUGGACcCGaCAUa- -3' miRNA: 3'- cGGUAGGU--------CGCGGUAUCUG-GC-GUAga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 35378 | 0.67 | 0.897825 |
Target: 5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3' miRNA: 3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 32905 | 0.67 | 0.897825 |
Target: 5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3' miRNA: 3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 36976 | 0.67 | 0.891178 |
Target: 5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3' miRNA: 3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 103115 | 0.7 | 0.767054 |
Target: 5'- aGCCAauacgUCCGGCGCgGUAG-CCGCcggCg -3' miRNA: 3'- -CGGU-----AGGUCGCGgUAUCuGGCGua-Ga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 21761 | 0.7 | 0.776501 |
Target: 5'- gGCCGUCUugAGCGCCGUAacuuuGGCgGCAgUCg -3' miRNA: 3'- -CGGUAGG--UCGCGGUAU-----CUGgCGU-AGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 162591 | 0.69 | 0.785816 |
Target: 5'- uGCCgcGUCCAGCGCC----GCCGCAc-- -3' miRNA: 3'- -CGG--UAGGUCGCGGuaucUGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 7068 | 0.69 | 0.82159 |
Target: 5'- cGCCggCCGGCGCCGUcGcGCUGCGg-- -3' miRNA: 3'- -CGGuaGGUCGCGGUAuC-UGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 128664 | 0.69 | 0.830117 |
Target: 5'- uGCUGUCCAGCaGCUGU-GACUGCAg-- -3' miRNA: 3'- -CGGUAGGUCG-CGGUAuCUGGCGUaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 9815 | 0.68 | 0.846617 |
Target: 5'- cGCgG-CCGGCuaCAUGGGCCGCcgCa -3' miRNA: 3'- -CGgUaGGUCGcgGUAUCUGGCGuaGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 35443 | 0.68 | 0.838462 |
Target: 5'- cGCCgcGUCCGGCGCCGguaa--GCAUCa -3' miRNA: 3'- -CGG--UAGGUCGCGGUaucuggCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 71408 | 0.68 | 0.846617 |
Target: 5'- cGCC-UCUAGgGCCAUGGACCa----- -3' miRNA: 3'- -CGGuAGGUCgCGGUAUCUGGcguaga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 107670 | 0.68 | 0.846617 |
Target: 5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3' miRNA: 3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 30366 | 0.68 | 0.854574 |
Target: 5'- aGCCccUUCGGCGCC----GCCGCGUCg -3' miRNA: 3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5' |
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24650 | 5' | -55.2 | NC_005264.1 | + | 146278 | 0.67 | 0.8843 |
Target: 5'- cGCCGccCCGGCGCCGcccACCGCG-CUg -3' miRNA: 3'- -CGGUa-GGUCGCGGUaucUGGCGUaGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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