miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24650 5' -55.2 NC_005264.1 + 107670 0.68 0.846617
Target:  5'- cGCCuucagCC-GCGCCcagAGGCCGCAUa- -3'
miRNA:   3'- -CGGua---GGuCGCGGua-UCUGGCGUAga -5'
24650 5' -55.2 NC_005264.1 + 32905 0.67 0.897825
Target:  5'- cGCCAUCCAGcCGaCCAauGACCGgGc-- -3'
miRNA:   3'- -CGGUAGGUC-GC-GGUauCUGGCgUaga -5'
24650 5' -55.2 NC_005264.1 + 36976 0.67 0.891178
Target:  5'- uGCgCG-CUGGCGCCAUAGucGCCGCcgCc -3'
miRNA:   3'- -CG-GUaGGUCGCGGUAUC--UGGCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 146278 0.67 0.8843
Target:  5'- cGCCGccCCGGCGCCGcccACCGCG-CUg -3'
miRNA:   3'- -CGGUa-GGUCGCGGUaucUGGCGUaGA- -5'
24650 5' -55.2 NC_005264.1 + 122602 0.67 0.8843
Target:  5'- cGCaCGUCCA-CGacaGUAGACUGCGUCg -3'
miRNA:   3'- -CG-GUAGGUcGCgg-UAUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 87119 0.67 0.8843
Target:  5'- gGCC-UCCGGCGCCcgcGGGgCGCAccagUCUu -3'
miRNA:   3'- -CGGuAGGUCGCGGua-UCUgGCGU----AGA- -5'
24650 5' -55.2 NC_005264.1 + 3015 0.68 0.86987
Target:  5'- aUCAUCCAGCGCCccccgcAGuuugcagcgccGCUGCGUCUc -3'
miRNA:   3'- cGGUAGGUCGCGGua----UC-----------UGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 85557 0.68 0.86763
Target:  5'- uGCCGcgcacccaauucguUCCAG-GCCcaAGGCCGUAUCg -3'
miRNA:   3'- -CGGU--------------AGGUCgCGGuaUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 30366 0.68 0.854574
Target:  5'- aGCCccUUCGGCGCC----GCCGCGUCg -3'
miRNA:   3'- -CGGu-AGGUCGCGGuaucUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 35378 0.67 0.897825
Target:  5'- aCCAguugcgCCGGCGCCAUGuuCUgGCAUCa -3'
miRNA:   3'- cGGUa-----GGUCGCGGUAUcuGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 128464 0.67 0.904865
Target:  5'- cCCGUCUuuGGCGUCGgcaaguucgcgcuuGGCCGCGUCa -3'
miRNA:   3'- cGGUAGG--UCGCGGUau------------CUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 69577 0.66 0.916348
Target:  5'- aGCCGgggCCcuGGCGCCAccUAGcCCGCuugCUg -3'
miRNA:   3'- -CGGUa--GG--UCGCGGU--AUCuGGCGua-GA- -5'
24650 5' -55.2 NC_005264.1 + 83225 0.66 0.937672
Target:  5'- gGCCGUugcgcgUgGGCGUC-UAGGCCGCcgCUg -3'
miRNA:   3'- -CGGUA------GgUCGCGGuAUCUGGCGuaGA- -5'
24650 5' -55.2 NC_005264.1 + 90688 0.66 0.932704
Target:  5'- --aGUCUAGCGCCuugAGcGCCaGCAUCa -3'
miRNA:   3'- cggUAGGUCGCGGua-UC-UGG-CGUAGa -5'
24650 5' -55.2 NC_005264.1 + 95655 0.66 0.927494
Target:  5'- cGCCgcGUCaUAGCGCUGcAGGCCGcCAUCc -3'
miRNA:   3'- -CGG--UAG-GUCGCGGUaUCUGGC-GUAGa -5'
24650 5' -55.2 NC_005264.1 + 130301 0.66 0.927494
Target:  5'- aGCCAcauccacagCCAGgGCCGaggaUGGGUCGCAUCg -3'
miRNA:   3'- -CGGUa--------GGUCgCGGU----AUCUGGCGUAGa -5'
24650 5' -55.2 NC_005264.1 + 111064 0.66 0.922042
Target:  5'- cGCCAagUUC-GCGCCGggcGAUUGCAUCUc -3'
miRNA:   3'- -CGGU--AGGuCGCGGUau-CUGGCGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 104943 0.66 0.922042
Target:  5'- aGCCGUgCCaAGCGCCGagccucguGGCC-CAUCUa -3'
miRNA:   3'- -CGGUA-GG-UCGCGGUau------CUGGcGUAGA- -5'
24650 5' -55.2 NC_005264.1 + 57859 0.66 0.922042
Target:  5'- gGUCGU-CAGCGCCAgAGACgGCggCa -3'
miRNA:   3'- -CGGUAgGUCGCGGUaUCUGgCGuaGa -5'
24650 5' -55.2 NC_005264.1 + 4600 0.66 0.916348
Target:  5'- cCCcgCCAGCGCCGc-GGCgGCGUa- -3'
miRNA:   3'- cGGuaGGUCGCGGUauCUGgCGUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.