miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 3' -54.8 NC_005264.1 + 32874 0.66 0.939604
Target:  5'- cGGUCCcGCGGugguuggCUGuCGAGaAUCACg -3'
miRNA:   3'- aCCGGGaCGUCua-----GAC-GCUCaUAGUG- -5'
24651 3' -54.8 NC_005264.1 + 151900 0.66 0.939604
Target:  5'- cGGUCCcGCGGugguuggCUGuCGAGaAUCACg -3'
miRNA:   3'- aCCGGGaCGUCua-----GAC-GCUCaUAGUG- -5'
24651 3' -54.8 NC_005264.1 + 3777 0.66 0.934676
Target:  5'- gGGCCCUuggucgaccgccGCcGAUCUGCGuGgcgGUcCGCg -3'
miRNA:   3'- aCCGGGA------------CGuCUAGACGCuCa--UA-GUG- -5'
24651 3' -54.8 NC_005264.1 + 122803 0.66 0.934676
Target:  5'- gGGCCCUuggucgaccgccGCcGAUCUGCGuGgcgGUcCGCg -3'
miRNA:   3'- aCCGGGA------------CGuCUAGACGCuCa--UA-GUG- -5'
24651 3' -54.8 NC_005264.1 + 101050 0.66 0.934676
Target:  5'- cGGCCCgGUGGAgCUGCucGAGUcgAUCAg -3'
miRNA:   3'- aCCGGGaCGUCUaGACG--CUCA--UAGUg -5'
24651 3' -54.8 NC_005264.1 + 19538 0.66 0.924077
Target:  5'- aGGCCUUGUAGAcgauUCgGCGgugcucuuccucGGUAUCAa -3'
miRNA:   3'- aCCGGGACGUCU----AGaCGC------------UCAUAGUg -5'
24651 3' -54.8 NC_005264.1 + 104746 0.67 0.906321
Target:  5'- aGGCCUUGCuAGAUCgcaucgaagUGCG-GUAUCc- -3'
miRNA:   3'- aCCGGGACG-UCUAG---------ACGCuCAUAGug -5'
24651 3' -54.8 NC_005264.1 + 118697 0.67 0.899258
Target:  5'- -uGCCCUGCGGGUguugggagaagggCUGCGAGacGUgACg -3'
miRNA:   3'- acCGGGACGUCUA-------------GACGCUCa-UAgUG- -5'
24651 3' -54.8 NC_005264.1 + 76127 0.67 0.893262
Target:  5'- gGGgUCUGCAGAUCuUGCGcgacgcGGUA-CACg -3'
miRNA:   3'- aCCgGGACGUCUAG-ACGC------UCAUaGUG- -5'
24651 3' -54.8 NC_005264.1 + 109959 0.68 0.856546
Target:  5'- cGGCCCUGCuGAUg-GCaGGUAcCGCg -3'
miRNA:   3'- aCCGGGACGuCUAgaCGcUCAUaGUG- -5'
24651 3' -54.8 NC_005264.1 + 81392 0.7 0.777882
Target:  5'- cGGUgaCCUGCAauGGUCUGCGGGUGg--- -3'
miRNA:   3'- aCCG--GGACGU--CUAGACGCUCAUagug -5'
24651 3' -54.8 NC_005264.1 + 12458 0.7 0.768343
Target:  5'- aGGCCCgGCAGGcgUCaGCGAGUucUUGCg -3'
miRNA:   3'- aCCGGGaCGUCU--AGaCGCUCAu-AGUG- -5'
24651 3' -54.8 NC_005264.1 + 131485 0.7 0.768343
Target:  5'- aGGCCCgGCAGGcgUCaGCGAGUucUUGCg -3'
miRNA:   3'- aCCGGGaCGUCU--AGaCGCUCAu-AGUG- -5'
24651 3' -54.8 NC_005264.1 + 65463 0.71 0.698595
Target:  5'- cGG-CCUGCGGGcCUGCGAGc-UCGCa -3'
miRNA:   3'- aCCgGGACGUCUaGACGCUCauAGUG- -5'
24651 3' -54.8 NC_005264.1 + 139959 0.74 0.523238
Target:  5'- gGGCCCUGCccggAGAUgCUGCGAacccucgacGUGUCAg -3'
miRNA:   3'- aCCGGGACG----UCUA-GACGCU---------CAUAGUg -5'
24651 3' -54.8 NC_005264.1 + 92617 1.1 0.002703
Target:  5'- cUGGCCCUGCAGAUCUGCGAGUAUCACa -3'
miRNA:   3'- -ACCGGGACGUCUAGACGCUCAUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.