miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 5' -59.3 NC_005264.1 + 67312 0.65 0.814589
Target:  5'- cGCGgcGGCgCCUuccauaaCGUcacguacgaucgccGCCGCGAAGAGGGc -3'
miRNA:   3'- -CGCa-CCG-GGA-------GCG--------------CGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 2501 0.66 0.809487
Target:  5'- gGCG-GG-CCUCGCGCgacuucagCGCGGGGGGcGAc -3'
miRNA:   3'- -CGCaCCgGGAGCGCG--------GCGUUUCUC-CU- -5'
24651 5' -59.3 NC_005264.1 + 136575 0.66 0.809487
Target:  5'- -gGUGGCgUCgaagagCGgGUCGUAGAGAGGGc -3'
miRNA:   3'- cgCACCG-GGa-----GCgCGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 121528 0.66 0.809487
Target:  5'- gGCG-GG-CCUCGCGCgacuucagCGCGGGGGGcGAc -3'
miRNA:   3'- -CGCaCCgGGAGCGCG--------GCGUUUCUC-CU- -5'
24651 5' -59.3 NC_005264.1 + 48037 0.66 0.809487
Target:  5'- cGCGUGGCCaaUGCGCauggaGCAuuGgccaGGGAc -3'
miRNA:   3'- -CGCACCGGgaGCGCGg----CGUuuC----UCCU- -5'
24651 5' -59.3 NC_005264.1 + 160351 0.66 0.800862
Target:  5'- cGCGaGGCCCgccgaccaucgUCGaagcaGCCGCGAAGgcccagcuccGGGAa -3'
miRNA:   3'- -CGCaCCGGG-----------AGCg----CGGCGUUUC----------UCCU- -5'
24651 5' -59.3 NC_005264.1 + 41324 0.66 0.800862
Target:  5'- cGCGaGGCCCgccgaccaucgUCGaagcaGCCGCGAAGgcccagcuccGGGAa -3'
miRNA:   3'- -CGCaCCGGG-----------AGCg----CGGCGUUUC----------UCCU- -5'
24651 5' -59.3 NC_005264.1 + 4537 0.66 0.792093
Target:  5'- gGgGUGGUCUUCgGCGUCGCGccAAGucucGGGAu -3'
miRNA:   3'- -CgCACCGGGAG-CGCGGCGU--UUC----UCCU- -5'
24651 5' -59.3 NC_005264.1 + 26118 0.66 0.792093
Target:  5'- cGCGcGGCUCguggCGCGgCGCcGAGAGa- -3'
miRNA:   3'- -CGCaCCGGGa---GCGCgGCGuUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 123564 0.66 0.792093
Target:  5'- gGgGUGGUCUUCgGCGUCGCGccAAGucucGGGAu -3'
miRNA:   3'- -CgCACCGGGAG-CGCGGCGU--UUC----UCCU- -5'
24651 5' -59.3 NC_005264.1 + 134498 0.66 0.792093
Target:  5'- cGCGUGucGCCCgcuacccguaCGcCGCCGCAAAGAu-- -3'
miRNA:   3'- -CGCAC--CGGGa---------GC-GCGGCGUUUCUccu -5'
24651 5' -59.3 NC_005264.1 + 115645 0.66 0.791209
Target:  5'- cCGUGGCCC-CGCucaucccaggcuuGaCCGuCGAGGAGGc -3'
miRNA:   3'- cGCACCGGGaGCG-------------C-GGC-GUUUCUCCu -5'
24651 5' -59.3 NC_005264.1 + 65684 0.66 0.791209
Target:  5'- aCGUGGCUCUCGCgucucuccguagGCCGUuugcccgacccucAGAGAGa- -3'
miRNA:   3'- cGCACCGGGAGCG------------CGGCG-------------UUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 54332 0.66 0.783187
Target:  5'- -gGUGGCgCaCGaCGCCGUAccccacuaGAGAGGAu -3'
miRNA:   3'- cgCACCGgGaGC-GCGGCGU--------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 45412 0.66 0.774153
Target:  5'- gGCG-GcGCCCUgCGCGCCGCGAc----- -3'
miRNA:   3'- -CGCaC-CGGGA-GCGCGGCGUUucuccu -5'
24651 5' -59.3 NC_005264.1 + 97283 0.66 0.774153
Target:  5'- -aGUGGCcgcugCCUCGCGCagccaauuugaCGCGAuguacGAGGAg -3'
miRNA:   3'- cgCACCG-----GGAGCGCG-----------GCGUUu----CUCCU- -5'
24651 5' -59.3 NC_005264.1 + 125668 0.66 0.764999
Target:  5'- uGCGUcugcGGCCCagCGUGCUGCAucccgaacaugGAGAGa- -3'
miRNA:   3'- -CGCA----CCGGGa-GCGCGGCGU-----------UUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 87748 0.66 0.764999
Target:  5'- gGCGccGGCgCCUgccgcaGCGCCGCGAAGAa-- -3'
miRNA:   3'- -CGCa-CCG-GGAg-----CGCGGCGUUUCUccu -5'
24651 5' -59.3 NC_005264.1 + 18816 0.66 0.76223
Target:  5'- uCGUGGUCCgggauUCGUGCCaugugaccucauuuGCAucGAGGGg -3'
miRNA:   3'- cGCACCGGG-----AGCGCGG--------------CGUuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 56066 0.67 0.755733
Target:  5'- uGUGUagacGCCCUCuaGCCGUAGGacGAGGGa -3'
miRNA:   3'- -CGCAc---CGGGAGcgCGGCGUUU--CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.