miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 5' -59.3 NC_005264.1 + 92652 1.11 0.001204
Target:  5'- cGCGUGGCCCUCGCGCCGCAAAGAGGAg -3'
miRNA:   3'- -CGCACCGGGAGCGCGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 20241 0.74 0.340945
Target:  5'- gGCGUGGCCaucgUCGCgGCCGgCAuucAGGGGAc -3'
miRNA:   3'- -CGCACCGGg---AGCG-CGGC-GUu--UCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 75944 0.73 0.379589
Target:  5'- aGCGUGGUCUcuaUCGCgGCCGCcgccuguGAGGAa -3'
miRNA:   3'- -CGCACCGGG---AGCG-CGGCGuuu----CUCCU- -5'
24651 5' -59.3 NC_005264.1 + 126551 0.73 0.387662
Target:  5'- aCG-GGCuCUUCGCGCCGCGAAGAcguGGu -3'
miRNA:   3'- cGCaCCG-GGAGCGCGGCGUUUCU---CCu -5'
24651 5' -59.3 NC_005264.1 + 87698 0.73 0.412547
Target:  5'- gGCGUGGCCCUCGUGgaUGCc--GAGGc -3'
miRNA:   3'- -CGCACCGGGAGCGCg-GCGuuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 93448 0.72 0.456134
Target:  5'- uUGUGGCgCaggUgGuCGCCGCGGAGAGGAu -3'
miRNA:   3'- cGCACCGgG---AgC-GCGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 37683 0.71 0.483444
Target:  5'- cGCGcGGCCCUCGCccucCCGCAccuGAuGGAc -3'
miRNA:   3'- -CGCaCCGGGAGCGc---GGCGUuu-CU-CCU- -5'
24651 5' -59.3 NC_005264.1 + 15771 0.71 0.483444
Target:  5'- aGCGUGGCUC-CGgGCgaGCAGAGAGa- -3'
miRNA:   3'- -CGCACCGGGaGCgCGg-CGUUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 156709 0.71 0.483444
Target:  5'- cGCGcGGCCCUCGCccucCCGCAccuGAuGGAc -3'
miRNA:   3'- -CGCaCCGGGAGCGc---GGCGUuu-CU-CCU- -5'
24651 5' -59.3 NC_005264.1 + 119922 0.71 0.492722
Target:  5'- gGUGUacGGCCCcgugUCGCggGCCGCuGGGGGGAa -3'
miRNA:   3'- -CGCA--CCGGG----AGCG--CGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 896 0.71 0.492722
Target:  5'- gGUGUacGGCCCcgugUCGCggGCCGCuGGGGGGAa -3'
miRNA:   3'- -CGCA--CCGGG----AGCG--CGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 38962 0.71 0.501141
Target:  5'- aGCGUGGCCgagccuaCUCuGUGCCGCcuGGcGGAa -3'
miRNA:   3'- -CGCACCGG-------GAG-CGCGGCGuuUCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 157989 0.71 0.501141
Target:  5'- aGCGUGGCCgagccuaCUCuGUGCCGCcuGGcGGAa -3'
miRNA:   3'- -CGCACCGG-------GAG-CGCGGCGuuUCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 21240 0.7 0.548967
Target:  5'- cGCGUugacgacGGCUCgagugugCGCGCCGCGGAGGuGGu -3'
miRNA:   3'- -CGCA-------CCGGGa------GCGCGGCGUUUCU-CCu -5'
24651 5' -59.3 NC_005264.1 + 3815 0.7 0.549939
Target:  5'- cGCGaguucgGGCCCgggCgGgGCCGC-AGGAGGAa -3'
miRNA:   3'- -CGCa-----CCGGGa--G-CgCGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 122841 0.7 0.549939
Target:  5'- cGCGaguucgGGCCCgggCgGgGCCGC-AGGAGGAa -3'
miRNA:   3'- -CGCa-----CCGGGa--G-CgCGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 98223 0.7 0.549939
Target:  5'- gGCGUcgGGCC---GCGCUGCGGAGAGGu -3'
miRNA:   3'- -CGCA--CCGGgagCGCGGCGUUUCUCCu -5'
24651 5' -59.3 NC_005264.1 + 102787 0.7 0.569489
Target:  5'- -gGUGGCCUguguugCGCGaugcCCGCGauGAGAGGGg -3'
miRNA:   3'- cgCACCGGGa-----GCGC----GGCGU--UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 122053 0.7 0.578344
Target:  5'- aGCGgcuccGCUCUCgGCGCCGCGGaagauguAGGGGAc -3'
miRNA:   3'- -CGCac---CGGGAG-CGCGGCGUU-------UCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 157951 0.69 0.59812
Target:  5'- aGCGUGGCCUcgaacuccgcgugUCGCuuGCCGCcAAGcucuaAGGAu -3'
miRNA:   3'- -CGCACCGGG-------------AGCG--CGGCGuUUC-----UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.