miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 5' -59.3 NC_005264.1 + 54238 0.67 0.746364
Target:  5'- uGCGUucacgcuaGGCUgCUagaGCGCCGCAGGGAGc- -3'
miRNA:   3'- -CGCA--------CCGG-GAg--CGCGGCGUUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 120699 0.67 0.740696
Target:  5'- ---aGG-CCUCGCGCCGaCAAagccggcggucgggcGGAGGAc -3'
miRNA:   3'- cgcaCCgGGAGCGCGGC-GUU---------------UCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 77718 0.67 0.7369
Target:  5'- cGCGUGGCauuugUCUCGCaaUGCGccGAGGGa -3'
miRNA:   3'- -CGCACCG-----GGAGCGcgGCGUuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 102445 0.67 0.727349
Target:  5'- --cUGGCCCUUcaCGCCGCcguGGGGAa -3'
miRNA:   3'- cgcACCGGGAGc-GCGGCGuuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 46441 0.67 0.727349
Target:  5'- cGCG-GGCUCagCGagaGCCGaCGAAGAGGu -3'
miRNA:   3'- -CGCaCCGGGa-GCg--CGGC-GUUUCUCCu -5'
24651 5' -59.3 NC_005264.1 + 148567 0.67 0.727349
Target:  5'- uCGUGGCCCgcgaCGUGCC-CGAGGAa-- -3'
miRNA:   3'- cGCACCGGGa---GCGCGGcGUUUCUccu -5'
24651 5' -59.3 NC_005264.1 + 106249 0.67 0.717721
Target:  5'- cGCGaGGCgCUCGCGCCuGCugacGGcGGAu -3'
miRNA:   3'- -CGCaCCGgGAGCGCGG-CGuu--UCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 2380 0.67 0.717721
Target:  5'- -aGUGGCCgUCGC-CCGCA-GGAGc- -3'
miRNA:   3'- cgCACCGGgAGCGcGGCGUuUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 121407 0.67 0.717721
Target:  5'- -aGUGGCCgUCGC-CCGCA-GGAGc- -3'
miRNA:   3'- cgCACCGGgAGCGcGGCGUuUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 38054 0.67 0.714819
Target:  5'- cGCGUGGgUCUCccagcuuuuuucuuGCGCgGCGucacggaacggaGAGAGGAu -3'
miRNA:   3'- -CGCACCgGGAG--------------CGCGgCGU------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 157081 0.67 0.714819
Target:  5'- cGCGUGGgUCUCccagcuuuuuucuuGCGCgGCGucacggaacggaGAGAGGAu -3'
miRNA:   3'- -CGCACCgGGAG--------------CGCGgCGU------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 5201 0.67 0.708024
Target:  5'- uCGUG--UCUCGCGCCGCGgcGAGGc -3'
miRNA:   3'- cGCACcgGGAGCGCGGCGUuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 139141 0.67 0.708024
Target:  5'- cGUGUGGCCCgCGUGCCuCGGAacucaucAGGAg -3'
miRNA:   3'- -CGCACCGGGaGCGCGGcGUUUc------UCCU- -5'
24651 5' -59.3 NC_005264.1 + 88705 0.67 0.708024
Target:  5'- uGCGUGGCgUgCaUGCCGCAu-GAGGAc -3'
miRNA:   3'- -CGCACCGgGaGcGCGGCGUuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 124228 0.67 0.708024
Target:  5'- uCGUG--UCUCGCGCCGCGgcGAGGc -3'
miRNA:   3'- cGCACcgGGAGCGCGGCGUuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 29097 0.68 0.677612
Target:  5'- uGCGUauaGGCUCccaGCGCCGCAAgggcugucgugccAGAGGc -3'
miRNA:   3'- -CGCA---CCGGGag-CGCGGCGUU-------------UCUCCu -5'
24651 5' -59.3 NC_005264.1 + 43173 0.68 0.672669
Target:  5'- cGCGUGaGCCUcuaUCGCGCUGCcugcgacgcgggccgGcGGGGGGg -3'
miRNA:   3'- -CGCAC-CGGG---AGCGCGGCG---------------UuUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 162200 0.68 0.672669
Target:  5'- cGCGUGaGCCUcuaUCGCGCUGCcugcgacgcgggccgGcGGGGGGg -3'
miRNA:   3'- -CGCAC-CGGG---AGCGCGGCG---------------UuUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 131576 0.68 0.64885
Target:  5'- uGCGcGGCaCCUgGCGCCuaGGuguGGAGGGa -3'
miRNA:   3'- -CGCaCCG-GGAgCGCGGcgUU---UCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 58019 0.69 0.64288
Target:  5'- gGCGgacaGGCCgUCGUGCggcgcccgcucgucuCGCgAAAGAGGAg -3'
miRNA:   3'- -CGCa---CCGGgAGCGCG---------------GCG-UUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.