miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 5' -59.3 NC_005264.1 + 896 0.71 0.492722
Target:  5'- gGUGUacGGCCCcgugUCGCggGCCGCuGGGGGGAa -3'
miRNA:   3'- -CGCA--CCGGG----AGCG--CGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 2380 0.67 0.717721
Target:  5'- -aGUGGCCgUCGC-CCGCA-GGAGc- -3'
miRNA:   3'- cgCACCGGgAGCGcGGCGUuUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 2501 0.66 0.809487
Target:  5'- gGCG-GG-CCUCGCGCgacuucagCGCGGGGGGcGAc -3'
miRNA:   3'- -CGCaCCgGGAGCGCG--------GCGUUUCUC-CU- -5'
24651 5' -59.3 NC_005264.1 + 3815 0.7 0.549939
Target:  5'- cGCGaguucgGGCCCgggCgGgGCCGC-AGGAGGAa -3'
miRNA:   3'- -CGCa-----CCGGGa--G-CgCGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 4537 0.66 0.792093
Target:  5'- gGgGUGGUCUUCgGCGUCGCGccAAGucucGGGAu -3'
miRNA:   3'- -CgCACCGGGAG-CGCGGCGU--UUC----UCCU- -5'
24651 5' -59.3 NC_005264.1 + 5201 0.67 0.708024
Target:  5'- uCGUG--UCUCGCGCCGCGgcGAGGc -3'
miRNA:   3'- cGCACcgGGAGCGCGGCGUuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 5829 0.69 0.622967
Target:  5'- gGCgGUGGCCgccaCUCGCcugGCCGCGguuaucgcccuaucgAGGGGGAg -3'
miRNA:   3'- -CG-CACCGG----GAGCG---CGGCGU---------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 15771 0.71 0.483444
Target:  5'- aGCGUGGCUC-CGgGCgaGCAGAGAGa- -3'
miRNA:   3'- -CGCACCGGGaGCgCGg-CGUUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 18816 0.66 0.76223
Target:  5'- uCGUGGUCCgggauUCGUGCCaugugaccucauuuGCAucGAGGGg -3'
miRNA:   3'- cGCACCGGG-----AGCGCGG--------------CGUuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 20241 0.74 0.340945
Target:  5'- gGCGUGGCCaucgUCGCgGCCGgCAuucAGGGGAc -3'
miRNA:   3'- -CGCACCGGg---AGCG-CGGC-GUu--UCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 21240 0.7 0.548967
Target:  5'- cGCGUugacgacGGCUCgagugugCGCGCCGCGGAGGuGGu -3'
miRNA:   3'- -CGCA-------CCGGGa------GCGCGGCGUUUCU-CCu -5'
24651 5' -59.3 NC_005264.1 + 26118 0.66 0.792093
Target:  5'- cGCGcGGCUCguggCGCGgCGCcGAGAGa- -3'
miRNA:   3'- -CGCaCCGGGa---GCGCgGCGuUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 28407 0.69 0.609041
Target:  5'- gGCGUGGgUaugCGUGUCGCGGGGuAGGAc -3'
miRNA:   3'- -CGCACCgGga-GCGCGGCGUUUC-UCCU- -5'
24651 5' -59.3 NC_005264.1 + 29097 0.68 0.677612
Target:  5'- uGCGUauaGGCUCccaGCGCCGCAAgggcugucgugccAGAGGc -3'
miRNA:   3'- -CGCA---CCGGGag-CGCGGCGUU-------------UCUCCu -5'
24651 5' -59.3 NC_005264.1 + 37683 0.71 0.483444
Target:  5'- cGCGcGGCCCUCGCccucCCGCAccuGAuGGAc -3'
miRNA:   3'- -CGCaCCGGGAGCGc---GGCGUuu-CU-CCU- -5'
24651 5' -59.3 NC_005264.1 + 38054 0.67 0.714819
Target:  5'- cGCGUGGgUCUCccagcuuuuuucuuGCGCgGCGucacggaacggaGAGAGGAu -3'
miRNA:   3'- -CGCACCgGGAG--------------CGCGgCGU------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 38962 0.71 0.501141
Target:  5'- aGCGUGGCCgagccuaCUCuGUGCCGCcuGGcGGAa -3'
miRNA:   3'- -CGCACCGG-------GAG-CGCGGCGuuUCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 41324 0.66 0.800862
Target:  5'- cGCGaGGCCCgccgaccaucgUCGaagcaGCCGCGAAGgcccagcuccGGGAa -3'
miRNA:   3'- -CGCaCCGGG-----------AGCg----CGGCGUUUC----------UCCU- -5'
24651 5' -59.3 NC_005264.1 + 43173 0.68 0.672669
Target:  5'- cGCGUGaGCCUcuaUCGCGCUGCcugcgacgcgggccgGcGGGGGGg -3'
miRNA:   3'- -CGCAC-CGGG---AGCGCGGCG---------------UuUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 45412 0.66 0.774153
Target:  5'- gGCG-GcGCCCUgCGCGCCGCGAc----- -3'
miRNA:   3'- -CGCaC-CGGGA-GCGCGGCGUUucuccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.