miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24651 5' -59.3 NC_005264.1 + 92652 1.11 0.001204
Target:  5'- cGCGUGGCCCUCGCGCCGCAAAGAGGAg -3'
miRNA:   3'- -CGCACCGGGAGCGCGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 157081 0.67 0.714819
Target:  5'- cGCGUGGgUCUCccagcuuuuuucuuGCGCgGCGucacggaacggaGAGAGGAu -3'
miRNA:   3'- -CGCACCgGGAG--------------CGCGgCGU------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 106249 0.67 0.717721
Target:  5'- cGCGaGGCgCUCGCGCCuGCugacGGcGGAu -3'
miRNA:   3'- -CGCaCCGgGAGCGCGG-CGuu--UCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 67312 0.65 0.814589
Target:  5'- cGCGgcGGCgCCUuccauaaCGUcacguacgaucgccGCCGCGAAGAGGGc -3'
miRNA:   3'- -CGCa-CCG-GGA-------GCG--------------CGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 119922 0.71 0.492722
Target:  5'- gGUGUacGGCCCcgugUCGCggGCCGCuGGGGGGAa -3'
miRNA:   3'- -CGCA--CCGGG----AGCG--CGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 157989 0.71 0.501141
Target:  5'- aGCGUGGCCgagccuaCUCuGUGCCGCcuGGcGGAa -3'
miRNA:   3'- -CGCACCGG-------GAG-CGCGGCGuuUCuCCU- -5'
24651 5' -59.3 NC_005264.1 + 122841 0.7 0.549939
Target:  5'- cGCGaguucgGGCCCgggCgGgGCCGC-AGGAGGAa -3'
miRNA:   3'- -CGCa-----CCGGGa--G-CgCGGCGuUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 74177 0.69 0.599112
Target:  5'- gGCGcaagauugacUGGCUCUCGCGCauucagaaCGAGGGGGAc -3'
miRNA:   3'- -CGC----------ACCGGGAGCGCGgc------GUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 124855 0.69 0.622967
Target:  5'- gGCgGUGGCCgccaCUCGCcugGCCGCGguuaucgcccuaucgAGGGGGAg -3'
miRNA:   3'- -CG-CACCGG----GAGCG---CGGCGU---------------UUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 88705 0.67 0.708024
Target:  5'- uGCGUGGCgUgCaUGCCGCAu-GAGGAc -3'
miRNA:   3'- -CGCACCGgGaGcGCGGCGUuuCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 162200 0.68 0.672669
Target:  5'- cGCGUGaGCCUcuaUCGCGCUGCcugcgacgcgggccgGcGGGGGGg -3'
miRNA:   3'- -CGCAC-CGGG---AGCGCGGCG---------------UuUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 64516 0.69 0.609041
Target:  5'- cGCGcUGuucuGUCCgCGcCGCCGCGGAGGGGGg -3'
miRNA:   3'- -CGC-AC----CGGGaGC-GCGGCGUUUCUCCU- -5'
24651 5' -59.3 NC_005264.1 + 87698 0.73 0.412547
Target:  5'- gGCGUGGCCCUCGUGgaUGCc--GAGGc -3'
miRNA:   3'- -CGCACCGGGAGCGCg-GCGuuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 124228 0.67 0.708024
Target:  5'- uCGUG--UCUCGCGCCGCGgcGAGGc -3'
miRNA:   3'- cGCACcgGGAGCGCGGCGUuuCUCCu -5'
24651 5' -59.3 NC_005264.1 + 15771 0.71 0.483444
Target:  5'- aGCGUGGCUC-CGgGCgaGCAGAGAGa- -3'
miRNA:   3'- -CGCACCGGGaGCgCGg-CGUUUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 28407 0.69 0.609041
Target:  5'- gGCGUGGgUaugCGUGUCGCGGGGuAGGAc -3'
miRNA:   3'- -CGCACCgGga-GCGCGGCGUUUC-UCCU- -5'
24651 5' -59.3 NC_005264.1 + 139141 0.67 0.708024
Target:  5'- cGUGUGGCCCgCGUGCCuCGGAacucaucAGGAg -3'
miRNA:   3'- -CGCACCGGGaGCGCGGcGUUUc------UCCU- -5'
24651 5' -59.3 NC_005264.1 + 121407 0.67 0.717721
Target:  5'- -aGUGGCCgUCGC-CCGCA-GGAGc- -3'
miRNA:   3'- cgCACCGGgAGCGcGGCGUuUCUCcu -5'
24651 5' -59.3 NC_005264.1 + 156709 0.71 0.483444
Target:  5'- cGCGcGGCCCUCGCccucCCGCAccuGAuGGAc -3'
miRNA:   3'- -CGCaCCGGGAGCGc---GGCGUuu-CU-CCU- -5'
24651 5' -59.3 NC_005264.1 + 98223 0.7 0.549939
Target:  5'- gGCGUcgGGCC---GCGCUGCGGAGAGGu -3'
miRNA:   3'- -CGCA--CCGGgagCGCGGCGUUUCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.