miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 3' -54.7 NC_005264.1 + 132108 0.66 0.930176
Target:  5'- gGCUcuUUGCGcGGGA--AGAGCCUCCu -3'
miRNA:   3'- gUGAu-GACGC-CCCUgaUCUUGGAGGu -5'
24652 3' -54.7 NC_005264.1 + 4022 0.67 0.919252
Target:  5'- aCugUAgaGCGGGGGCaAG-GCCUCg- -3'
miRNA:   3'- -GugAUgaCGCCCCUGaUCuUGGAGgu -5'
24652 3' -54.7 NC_005264.1 + 120451 0.67 0.907357
Target:  5'- ------aGCGGGGAUgaggaaAGGGCCUCCGc -3'
miRNA:   3'- gugaugaCGCCCCUGa-----UCUUGGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 1424 0.67 0.907357
Target:  5'- ------aGCGGGGAUgaggaaAGGGCCUCCGc -3'
miRNA:   3'- gugaugaCGCCCCUGa-----UCUUGGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 106311 0.67 0.901049
Target:  5'- gACaGCUGCGGcGGGCaGGGcgaccCCUCCAc -3'
miRNA:   3'- gUGaUGACGCC-CCUGaUCUu----GGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 59560 0.68 0.880717
Target:  5'- aGC-ACgGCGucGGGGCuUAGGACCUCCGc -3'
miRNA:   3'- gUGaUGaCGC--CCCUG-AUCUUGGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 155235 0.68 0.86603
Target:  5'- uGCUGCgGCGGGGGaugAGGaagcAUCUCCGc -3'
miRNA:   3'- gUGAUGaCGCCCCUga-UCU----UGGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 40792 0.69 0.850486
Target:  5'- gCGCUgcaaACUGCGGGGggcGCUGGAugauuagcGCCggCCGg -3'
miRNA:   3'- -GUGA----UGACGCCCC---UGAUCU--------UGGa-GGU- -5'
24652 3' -54.7 NC_005264.1 + 159818 0.69 0.850486
Target:  5'- gCGCUgcaaACUGCGGGGggcGCUGGAugauuagcGCCggCCGg -3'
miRNA:   3'- -GUGA----UGACGCCCC---UGAUCU--------UGGa-GGU- -5'
24652 3' -54.7 NC_005264.1 + 17827 0.69 0.842408
Target:  5'- ---gACga-GGGGGCUAGAuCCUCCAu -3'
miRNA:   3'- gugaUGacgCCCCUGAUCUuGGAGGU- -5'
24652 3' -54.7 NC_005264.1 + 140329 0.69 0.842408
Target:  5'- gCAUUAcCUGCGGGGGCccagAGAugC-CCGc -3'
miRNA:   3'- -GUGAU-GACGCCCCUGa---UCUugGaGGU- -5'
24652 3' -54.7 NC_005264.1 + 10874 0.69 0.834136
Target:  5'- uGCUGCUGCGaGGGGCcguggGGAAUUcCCGg -3'
miRNA:   3'- gUGAUGACGC-CCCUGa----UCUUGGaGGU- -5'
24652 3' -54.7 NC_005264.1 + 129900 0.69 0.834136
Target:  5'- uGCUGCUGCGaGGGGCcguggGGAAUUcCCGg -3'
miRNA:   3'- gUGAUGACGC-CCCUGa----UCUUGGaGGU- -5'
24652 3' -54.7 NC_005264.1 + 153265 0.69 0.825676
Target:  5'- gACUACUGCGGGcGACguuuuACCUgCUAg -3'
miRNA:   3'- gUGAUGACGCCC-CUGaucu-UGGA-GGU- -5'
24652 3' -54.7 NC_005264.1 + 132495 0.7 0.780857
Target:  5'- gGCUcCUGCGGGGACUcggGGGACagCUCgGg -3'
miRNA:   3'- gUGAuGACGCCCCUGA---UCUUG--GAGgU- -5'
24652 3' -54.7 NC_005264.1 + 13468 0.7 0.780857
Target:  5'- gGCUcCUGCGGGGACUcggGGGACagCUCgGg -3'
miRNA:   3'- gUGAuGACGCCCCUGA---UCUUG--GAGgU- -5'
24652 3' -54.7 NC_005264.1 + 157379 0.71 0.712677
Target:  5'- uGCUggGCgGCGGGGcggUUAGGACCUCCu -3'
miRNA:   3'- gUGA--UGaCGCCCCu--GAUCUUGGAGGu -5'
24652 3' -54.7 NC_005264.1 + 38352 0.71 0.712677
Target:  5'- uGCUggGCgGCGGGGcggUUAGGACCUCCu -3'
miRNA:   3'- gUGA--UGaCGCCCCu--GAUCUUGGAGGu -5'
24652 3' -54.7 NC_005264.1 + 93129 0.9 0.068662
Target:  5'- gCACUACUG-GcGGGACUAGAACCUCCAg -3'
miRNA:   3'- -GUGAUGACgC-CCCUGAUCUUGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.