miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 38397 0.65 0.721882
Target:  5'- aCGCcGAGAcagaugccgcguacGCCcugcuGGCCCCuggcaagcaaucgAGCGCCGg -3'
miRNA:   3'- -GCGcCUCU--------------UGGuu---CCGGGG-------------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 157424 0.65 0.721882
Target:  5'- aCGCcGAGAcagaugccgcguacGCCcugcuGGCCCCuggcaagcaaucgAGCGCCGg -3'
miRNA:   3'- -GCGcCUCU--------------UGGuu---CCGGGG-------------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 53120 0.66 0.716172
Target:  5'- gGCGaGGGGGCCGAGGaggCCgGGCaaucuGCCGc -3'
miRNA:   3'- gCGC-CUCUUGGUUCCg--GGgUCG-----CGGC- -5'
24652 5' -61.4 NC_005264.1 + 5022 0.66 0.716172
Target:  5'- gCGCaGAGGagGCCAcgAGGUUCCgcgucgugGGCGCCGc -3'
miRNA:   3'- -GCGcCUCU--UGGU--UCCGGGG--------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 83040 0.66 0.716172
Target:  5'- aCGCGGgauAGAcaauCUAagcGGGCUCCGGCGCa- -3'
miRNA:   3'- -GCGCC---UCUu---GGU---UCCGGGGUCGCGgc -5'
24652 5' -61.4 NC_005264.1 + 102159 0.66 0.716172
Target:  5'- uGCGGAG-GCCuuGGGagCCCAGCuGCgCGa -3'
miRNA:   3'- gCGCCUCuUGGu-UCCg-GGGUCG-CG-GC- -5'
24652 5' -61.4 NC_005264.1 + 57992 0.66 0.716172
Target:  5'- gCGCGGcGGccgugGCuCAGcGGCCCCGGCggacagGCCGu -3'
miRNA:   3'- -GCGCCuCU-----UG-GUU-CCGGGGUCG------CGGC- -5'
24652 5' -61.4 NC_005264.1 + 38203 0.66 0.706604
Target:  5'- gCGCGGc---CCGAuagcGGCUCCGGuCGCCGa -3'
miRNA:   3'- -GCGCCucuuGGUU----CCGGGGUC-GCGGC- -5'
24652 5' -61.4 NC_005264.1 + 158978 0.66 0.706604
Target:  5'- aCGUGGGGcAGCCcaauCCCCGGCGCa- -3'
miRNA:   3'- -GCGCCUC-UUGGuuccGGGGUCGCGgc -5'
24652 5' -61.4 NC_005264.1 + 157230 0.66 0.706604
Target:  5'- gCGCGGc---CCGAuagcGGCUCCGGuCGCCGa -3'
miRNA:   3'- -GCGCCucuuGGUU----CCGGGGUC-GCGGC- -5'
24652 5' -61.4 NC_005264.1 + 97696 0.66 0.706604
Target:  5'- cCGCGGuguuggucauaGGcAACCGAGGgCUUGGCGUCGc -3'
miRNA:   3'- -GCGCC-----------UC-UUGGUUCCgGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 5578 0.66 0.706604
Target:  5'- uGCGGAG-ACCAc--CUCCAacGCGCCGa -3'
miRNA:   3'- gCGCCUCuUGGUuccGGGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 7258 0.66 0.705644
Target:  5'- gGCGGAGGucggcGCCAggacgaagacggcGGGgCCUAGCGaCGg -3'
miRNA:   3'- gCGCCUCU-----UGGU-------------UCCgGGGUCGCgGC- -5'
24652 5' -61.4 NC_005264.1 + 126285 0.66 0.705644
Target:  5'- gGCGGAGGucggcGCCAggacgaagacggcGGGgCCUAGCGaCGg -3'
miRNA:   3'- gCGCCUCU-----UGGU-------------UCCgGGGUCGCgGC- -5'
24652 5' -61.4 NC_005264.1 + 65572 0.66 0.704683
Target:  5'- aGCGGccacuaccguGCCAAGG-CCCGGCgGCCa -3'
miRNA:   3'- gCGCCucu-------UGGUUCCgGGGUCG-CGGc -5'
24652 5' -61.4 NC_005264.1 + 151906 0.66 0.696978
Target:  5'- gGCGGAGGggACgGcGGCUCCAuGaCGCCa -3'
miRNA:   3'- gCGCCUCU--UGgUuCCGGGGU-C-GCGGc -5'
24652 5' -61.4 NC_005264.1 + 156292 0.66 0.696978
Target:  5'- uCGCGGuGAACucgCAGGGUCUCccguacgcGGCGCUGc -3'
miRNA:   3'- -GCGCCuCUUG---GUUCCGGGG--------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 91402 0.66 0.687302
Target:  5'- aGUGGuu------GGCCCUAGCGCCGg -3'
miRNA:   3'- gCGCCucuugguuCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 54893 0.66 0.687302
Target:  5'- aGCGGaAGAucaccuuccacGCgAAGGUCgCGGCGCUGc -3'
miRNA:   3'- gCGCC-UCU-----------UGgUUCCGGgGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 132919 0.66 0.687302
Target:  5'- aGCGGcGuACCu---CCCUAGCGCCGa -3'
miRNA:   3'- gCGCCuCuUGGuuccGGGGUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.