miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 38397 0.65 0.721882
Target:  5'- aCGCcGAGAcagaugccgcguacGCCcugcuGGCCCCuggcaagcaaucgAGCGCCGg -3'
miRNA:   3'- -GCGcCUCU--------------UGGuu---CCGGGG-------------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 157424 0.65 0.721882
Target:  5'- aCGCcGAGAcagaugccgcguacGCCcugcuGGCCCCuggcaagcaaucgAGCGCCGg -3'
miRNA:   3'- -GCGcCUCU--------------UGGuu---CCGGGG-------------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 53120 0.66 0.716172
Target:  5'- gGCGaGGGGGCCGAGGaggCCgGGCaaucuGCCGc -3'
miRNA:   3'- gCGC-CUCUUGGUUCCg--GGgUCG-----CGGC- -5'
24652 5' -61.4 NC_005264.1 + 42602 0.66 0.677584
Target:  5'- uCGCuGAGucgguACaccGGCCCCGGCGCUu -3'
miRNA:   3'- -GCGcCUCu----UGguuCCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 135165 0.66 0.677584
Target:  5'- gGCaGAGGccagccgcguACCucGGUCCgAGCGCCGc -3'
miRNA:   3'- gCGcCUCU----------UGGuuCCGGGgUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 136439 0.66 0.667832
Target:  5'- gGCGGaAGAgcaugggcGCUGAGGCCgcgcucagagaCGGCGCCGc -3'
miRNA:   3'- gCGCC-UCU--------UGGUUCCGGg----------GUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 120389 0.66 0.666855
Target:  5'- aGCaGAaacauucGAGCgCGAGuGCCgCAGCGCCGa -3'
miRNA:   3'- gCGcCU-------CUUG-GUUC-CGGgGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 43931 0.66 0.674662
Target:  5'- aCGUcGAGGGCCAaguacgcgguggucAGGCCCUAcCGCCc -3'
miRNA:   3'- -GCGcCUCUUGGU--------------UCCGGGGUcGCGGc -5'
24652 5' -61.4 NC_005264.1 + 34270 0.66 0.677584
Target:  5'- gCGCGGgcgacgcgucgaAGAGuaaguuCgAGGGCCCCucgagGGCGCCGc -3'
miRNA:   3'- -GCGCC------------UCUU------GgUUCCGGGG-----UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 75078 0.66 0.677584
Target:  5'- aCGCGGAGAGgCAGGGUgU--GCGCUa -3'
miRNA:   3'- -GCGCCUCUUgGUUCCGgGguCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 66546 0.66 0.677584
Target:  5'- aCGCGGAc-GCCGAGGCgCaCgAGCGCg- -3'
miRNA:   3'- -GCGCCUcuUGGUUCCG-G-GgUCGCGgc -5'
24652 5' -61.4 NC_005264.1 + 91402 0.66 0.687302
Target:  5'- aGUGGuu------GGCCCUAGCGCCGg -3'
miRNA:   3'- gCGCCucuugguuCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 102159 0.66 0.716172
Target:  5'- uGCGGAG-GCCuuGGGagCCCAGCuGCgCGa -3'
miRNA:   3'- gCGCCUCuUGGu-UCCg-GGGUCG-CG-GC- -5'
24652 5' -61.4 NC_005264.1 + 54893 0.66 0.687302
Target:  5'- aGCGGaAGAucaccuuccacGCgAAGGUCgCGGCGCUGc -3'
miRNA:   3'- gCGCC-UCU-----------UGgUUCCGGgGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 151906 0.66 0.696978
Target:  5'- gGCGGAGGggACgGcGGCUCCAuGaCGCCa -3'
miRNA:   3'- gCGCCUCU--UGgUuCCGGGGU-C-GCGGc -5'
24652 5' -61.4 NC_005264.1 + 156292 0.66 0.696978
Target:  5'- uCGCGGuGAACucgCAGGGUCUCccguacgcGGCGCUGc -3'
miRNA:   3'- -GCGCCuCUUG---GUUCCGGGG--------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 7258 0.66 0.705644
Target:  5'- gGCGGAGGucggcGCCAggacgaagacggcGGGgCCUAGCGaCGg -3'
miRNA:   3'- gCGCCUCU-----UGGU-------------UCCgGGGUCGCgGC- -5'
24652 5' -61.4 NC_005264.1 + 38203 0.66 0.706604
Target:  5'- gCGCGGc---CCGAuagcGGCUCCGGuCGCCGa -3'
miRNA:   3'- -GCGCCucuuGGUU----CCGGGGUC-GCGGC- -5'
24652 5' -61.4 NC_005264.1 + 158978 0.66 0.706604
Target:  5'- aCGUGGGGcAGCCcaauCCCCGGCGCa- -3'
miRNA:   3'- -GCGCCUC-UUGGuuccGGGGUCGCGgc -5'
24652 5' -61.4 NC_005264.1 + 97696 0.66 0.706604
Target:  5'- cCGCGGuguuggucauaGGcAACCGAGGgCUUGGCGUCGc -3'
miRNA:   3'- -GCGCC-----------UC-UUGGUUCCgGGGUCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.