miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 93164 1.07 0.001325
Target:  5'- cCGCGGAGAACCAAGGCCCCAGCGCCGc -3'
miRNA:   3'- -GCGCCUCUUGGUUCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 112988 0.86 0.042738
Target:  5'- gCGCGGcGucACCAGGGCCCCGGUGCCGu -3'
miRNA:   3'- -GCGCCuCu-UGGUUCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 40042 0.79 0.128515
Target:  5'- gGCGGucGACCAAgGGCCCgCAGCGCCc -3'
miRNA:   3'- gCGCCucUUGGUU-CCGGG-GUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 159069 0.79 0.128515
Target:  5'- gGCGGucGACCAAgGGCCCgCAGCGCCc -3'
miRNA:   3'- gCGCCucUUGGUU-CCGGG-GUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 13579 0.79 0.138447
Target:  5'- uCGCuGGcaaAGGGCUucGGCCCCAGCGCCa -3'
miRNA:   3'- -GCG-CC---UCUUGGuuCCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 136655 0.75 0.235096
Target:  5'- aGUGGGGcGCCAAcGGCCCCgccgacAGUGCCGc -3'
miRNA:   3'- gCGCCUCuUGGUU-CCGGGG------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 69551 0.75 0.242858
Target:  5'- aGCGccuuGAGGcauuccuccacugaaGCCGGGGCCCUGGCGCCa -3'
miRNA:   3'- gCGC----CUCU---------------UGGUUCCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 30444 0.74 0.257837
Target:  5'- uCG-GGGGAGCCGcGGGCCCCGGCucgGCCc -3'
miRNA:   3'- -GCgCCUCUUGGU-UCCGGGGUCG---CGGc -5'
24652 5' -61.4 NC_005264.1 + 149471 0.74 0.257837
Target:  5'- uCG-GGGGAGCCGcGGGCCCCGGCucgGCCc -3'
miRNA:   3'- -GCgCCUCUUGGU-UCCGGGGUCG---CGGc -5'
24652 5' -61.4 NC_005264.1 + 7376 0.74 0.260208
Target:  5'- cCGCGGuuuucauuucuucGAUCGcGGCCCCGGCGCCGu -3'
miRNA:   3'- -GCGCCuc-----------UUGGUuCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 126116 0.74 0.263196
Target:  5'- uGCGGGGAACUGAGGUuucgguuUCCAacGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUCCG-------GGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 7089 0.74 0.263196
Target:  5'- uGCGGGGAACUGAGGUuucgguuUCCAacGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUCCG-------GGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 50278 0.74 0.263797
Target:  5'- cCGCGGAGAucACCAAcGCCCUauuucGGCgGCCGg -3'
miRNA:   3'- -GCGCCUCU--UGGUUcCGGGG-----UCG-CGGC- -5'
24652 5' -61.4 NC_005264.1 + 146260 0.74 0.276051
Target:  5'- gGcCGGAGucaugugcGCCGccGCCCCGGCGCCGc -3'
miRNA:   3'- gC-GCCUCu-------UGGUucCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 148154 0.73 0.295278
Target:  5'- uCGCGaAGGGCCAaguauGGGCCCCGGCagcauggucucuGCCGu -3'
miRNA:   3'- -GCGCcUCUUGGU-----UCCGGGGUCG------------CGGC- -5'
24652 5' -61.4 NC_005264.1 + 133193 0.73 0.301245
Target:  5'- aCGCGGcGGACCGacugcGGGCCUCGuucguccGCGCCGu -3'
miRNA:   3'- -GCGCCuCUUGGU-----UCCGGGGU-------CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 93258 0.72 0.33464
Target:  5'- aGCGGgcuAGGuggcGCCAGGGCCCCGGCuucaguggaggaauGCCu -3'
miRNA:   3'- gCGCC---UCU----UGGUUCCGGGGUCG--------------CGGc -5'
24652 5' -61.4 NC_005264.1 + 98763 0.72 0.374566
Target:  5'- gCGCGaGAGAACCcacAGGCCgagaCCuGCGCCu -3'
miRNA:   3'- -GCGC-CUCUUGGu--UCCGG----GGuCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 105581 0.72 0.374566
Target:  5'- cCGCGG---GCUAGGGCUCgAGCGCCu -3'
miRNA:   3'- -GCGCCucuUGGUUCCGGGgUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 103274 0.72 0.374566
Target:  5'- gCGCGGAGGuCCuaaGCCCCGaCGCCGu -3'
miRNA:   3'- -GCGCCUCUuGGuucCGGGGUcGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.