miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 42602 0.66 0.677584
Target:  5'- uCGCuGAGucgguACaccGGCCCCGGCGCUu -3'
miRNA:   3'- -GCGcCUCu----UGguuCCGGGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 153297 0.66 0.677584
Target:  5'- gCGCGGgcgacgcgucgaAGAGuaaguuCgAGGGCCCCucgagGGCGCCGc -3'
miRNA:   3'- -GCGCC------------UCUU------GgUUCCGGGG-----UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 49626 0.66 0.677584
Target:  5'- gGUGGGGuACCAggGGGCCaaGGUGCuCGa -3'
miRNA:   3'- gCGCCUCuUGGU--UCCGGggUCGCG-GC- -5'
24652 5' -61.4 NC_005264.1 + 34270 0.66 0.677584
Target:  5'- gCGCGGgcgacgcgucgaAGAGuaaguuCgAGGGCCCCucgagGGCGCCGc -3'
miRNA:   3'- -GCGCC------------UCUU------GgUUCCGGGG-----UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 66546 0.66 0.677584
Target:  5'- aCGCGGAc-GCCGAGGCgCaCgAGCGCg- -3'
miRNA:   3'- -GCGCCUcuUGGUUCCG-G-GgUCGCGgc -5'
24652 5' -61.4 NC_005264.1 + 135165 0.66 0.677584
Target:  5'- gGCaGAGGccagccgcguACCucGGUCCgAGCGCCGc -3'
miRNA:   3'- gCGcCUCU----------UGGuuCCGGGgUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 75078 0.66 0.677584
Target:  5'- aCGCGGAGAGgCAGGGUgU--GCGCUa -3'
miRNA:   3'- -GCGCCUCUUgGUUCCGgGguCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 43931 0.66 0.674662
Target:  5'- aCGUcGAGGGCCAaguacgcgguggucAGGCCCUAcCGCCc -3'
miRNA:   3'- -GCGcCUCUUGGU--------------UCCGGGGUcGCGGc -5'
24652 5' -61.4 NC_005264.1 + 136439 0.66 0.667832
Target:  5'- gGCGGaAGAgcaugggcGCUGAGGCCgcgcucagagaCGGCGCCGc -3'
miRNA:   3'- gCGCC-UCU--------UGGUUCCGGg----------GUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 120389 0.66 0.666855
Target:  5'- aGCaGAaacauucGAGCgCGAGuGCCgCAGCGCCGa -3'
miRNA:   3'- gCGcCU-------CUUG-GUUC-CGGgGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 47547 0.67 0.658053
Target:  5'- cCGCGGuAGAuuucugugACgAAGGCCUC-GUGCCa -3'
miRNA:   3'- -GCGCC-UCU--------UGgUUCCGGGGuCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 120681 0.67 0.658053
Target:  5'- aGCuacaGGGACCAaacaAGGCCUC-GCGCCGa -3'
miRNA:   3'- gCGcc--UCUUGGU----UCCGGGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 74266 0.67 0.657074
Target:  5'- gGCGGuAGAGgCGGGGCCUCAuauggcagcauuaGCGgCGg -3'
miRNA:   3'- gCGCC-UCUUgGUUCCGGGGU-------------CGCgGC- -5'
24652 5' -61.4 NC_005264.1 + 66699 0.67 0.655116
Target:  5'- gGCGGGGGgcguacuacgugucGCCGGGgagcaacaaGCgCCGGCGCCu -3'
miRNA:   3'- gCGCCUCU--------------UGGUUC---------CGgGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 131625 0.67 0.652176
Target:  5'- gCGCGGAGAagaacagauggucacGCCucGGUCUgCGGUGCCc -3'
miRNA:   3'- -GCGCCUCU---------------UGGuuCCGGG-GUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 154582 0.67 0.652176
Target:  5'- gGCGGAc-ACCAGGGCgCCGcuggccagacuaaccGCGCUGg -3'
miRNA:   3'- gCGCCUcuUGGUUCCGgGGU---------------CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 71394 0.67 0.648255
Target:  5'- gCGCGGAGcgUCAucGCCuCUAGgGCCa -3'
miRNA:   3'- -GCGCCUCuuGGUucCGG-GGUCgCGGc -5'
24652 5' -61.4 NC_005264.1 + 24202 0.67 0.648255
Target:  5'- gCGCGGu--GCCGGuGGCCgaagCCAgcGCGCCGg -3'
miRNA:   3'- -GCGCCucuUGGUU-CCGG----GGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 36527 0.67 0.648255
Target:  5'- gGCGGgcgcaGGAGCCAucGGCCgC-GCGCCc -3'
miRNA:   3'- gCGCC-----UCUUGGUu-CCGGgGuCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 100480 0.67 0.648255
Target:  5'- uCGCGGc-GGCCAGGGCCCUggaGGgGuuGc -3'
miRNA:   3'- -GCGCCucUUGGUUCCGGGG---UCgCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.