miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24652 5' -61.4 NC_005264.1 + 2700 0.69 0.512853
Target:  5'- gGCGGAGGAgggaguCCAgauAGGCCgCCcGCgGCCGg -3'
miRNA:   3'- gCGCCUCUU------GGU---UCCGG-GGuCG-CGGC- -5'
24652 5' -61.4 NC_005264.1 + 2835 0.7 0.458172
Target:  5'- gGCGGAGGGCCGGucGCgCUcGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUc-CGgGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 2995 0.67 0.609017
Target:  5'- --aGGAGGACCGGccGGCgcuaaucaUCCAGCGCCc -3'
miRNA:   3'- gcgCCUCUUGGUU--CCG--------GGGUCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 3613 0.67 0.609017
Target:  5'- cCGCGGGGGGCCGcgaGGGCgggcGCGCUGa -3'
miRNA:   3'- -GCGCCUCUUGGU---UCCGggguCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 3831 0.71 0.413408
Target:  5'- gCGCGGAG-ACCugcuccuggcauGGGUCCU-GCGCCGg -3'
miRNA:   3'- -GCGCCUCuUGGu-----------UCCGGGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 4029 0.69 0.522234
Target:  5'- aGCGGGGG--CAAGGCCUCGGCGa-- -3'
miRNA:   3'- gCGCCUCUugGUUCCGGGGUCGCggc -5'
24652 5' -61.4 NC_005264.1 + 4581 0.68 0.559404
Target:  5'- aGCcGGGAACgcAGGCCcuccccgCCAGCGCCGc -3'
miRNA:   3'- gCGcCUCUUGguUCCGG-------GGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 4892 0.7 0.467076
Target:  5'- aCGCGGAGu-UCGAGGCCacgCUGGCcGCCGu -3'
miRNA:   3'- -GCGCCUCuuGGUUCCGG---GGUCG-CGGC- -5'
24652 5' -61.4 NC_005264.1 + 5022 0.66 0.716172
Target:  5'- gCGCaGAGGagGCCAcgAGGUUCCgcgucgugGGCGCCGc -3'
miRNA:   3'- -GCGcCUCU--UGGU--UCCGGGG--------UCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 5578 0.66 0.706604
Target:  5'- uGCGGAG-ACCAc--CUCCAacGCGCCGa -3'
miRNA:   3'- gCGCCUCuUGGUuccGGGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 6132 0.7 0.458172
Target:  5'- uGCgGGAGGGCgAGGGCCgC-GCGCCc -3'
miRNA:   3'- gCG-CCUCUUGgUUCCGGgGuCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 7089 0.74 0.263196
Target:  5'- uGCGGGGAACUGAGGUuucgguuUCCAacGCGCCGu -3'
miRNA:   3'- gCGCCUCUUGGUUCCG-------GGGU--CGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 7258 0.66 0.705644
Target:  5'- gGCGGAGGucggcGCCAggacgaagacggcGGGgCCUAGCGaCGg -3'
miRNA:   3'- gCGCCUCU-----UGGU-------------UCCgGGGUCGCgGC- -5'
24652 5' -61.4 NC_005264.1 + 7376 0.74 0.260208
Target:  5'- cCGCGGuuuucauuucuucGAUCGcGGCCCCGGCGCCGu -3'
miRNA:   3'- -GCGCCuc-----------UUGGUuCCGGGGUCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 8005 0.67 0.61882
Target:  5'- uGCGGGGccGGCaGAGGCgCCCgccacgacGGCGCCa -3'
miRNA:   3'- gCGCCUC--UUGgUUCCG-GGG--------UCGCGGc -5'
24652 5' -61.4 NC_005264.1 + 8297 0.68 0.57973
Target:  5'- cCGUGGGcGACgGGGGCaCCuGCGCCGc -3'
miRNA:   3'- -GCGCCUcUUGgUUCCGgGGuCGCGGC- -5'
24652 5' -61.4 NC_005264.1 + 9844 0.71 0.4235
Target:  5'- uCGCGaGAGggUCAAgcGGCCCCuaucgGGCGCgGu -3'
miRNA:   3'- -GCGC-CUCuuGGUU--CCGGGG-----UCGCGgC- -5'
24652 5' -61.4 NC_005264.1 + 13075 0.68 0.593369
Target:  5'- gGCGGGGAGaCCuuGGGCUCCgaggauuccgaacggAGCGCgGa -3'
miRNA:   3'- gCGCCUCUU-GGu-UCCGGGG---------------UCGCGgC- -5'
24652 5' -61.4 NC_005264.1 + 13358 0.7 0.476068
Target:  5'- aCGuCGGGgccGAGCCGGGGCCCgCGGCucccCCGa -3'
miRNA:   3'- -GC-GCCU---CUUGGUUCCGGG-GUCGc---GGC- -5'
24652 5' -61.4 NC_005264.1 + 13579 0.79 0.138447
Target:  5'- uCGCuGGcaaAGGGCUucGGCCCCAGCGCCa -3'
miRNA:   3'- -GCG-CC---UCUUGGuuCCGGGGUCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.